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AT4G29950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G19240.1); Has 1856 Blast hits to 1473 proteins in 235 species: Archae - 2; Bacteria - 59; Metazoa - 791; Fungi - 326; Plants - 250; Viruses - 6; Other Eukaryotes - 422 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YX8ZeggNOG:KOG1091EMBL:AL050352EMBL:AL161575EMBL:AY074278EMBL:AY096528EMBL:CP002687
EnsemblPlants:AT4G29950EnsemblPlants:AT4G29950.1entrez:829118ExpressionAtlas:Q9SZR5GeneID:829118Gramene:AT4G29950.1hmmpanther:PTHR22957
hmmpanther:PTHR22957:SF274HOGENOM:HOG000242002InterPro:IPR000195KEGG:ath:AT4G29950KO:K18469ncoils:CoilOMA:EETRCNG
Pfam:PF00566Pfscan:PS50086PhylomeDB:Q9SZR5PIR:T08556PROSITE:PS50086Proteomes:UP000006548RefSeq:NP_567836.2
SMART:SM00164SMR:Q9SZR5STRING:3702.AT4G29950.1SUPFAM:SSF47923TAIR:AT4G29950UniGene:At.20316UniGene:At.31873
UniProt:Q9SZR5
Coordinates (TAIR10) chr4:+:14657464..14660370
Molecular Weight (calculated) 93183.20 Da
IEP (calculated) 4.67
GRAVY (calculated) -0.47
Length 828 amino acids
Sequence (TAIR10)
(BLAST)
001: MVPSEIESLG DESDRRFANL RGLRWRVNLG VLPFQSSSID DLRKATAESR RRYAALRRRL LIDPHLSKDV RNSPDLSIDN PLSQNPDSTW GRFFRNAELE
101: KTLDQDLSRL YPEHWSYFQA PGCQGMLRRI LLLWCLKHPE YGYRQGMHEL LAPLLYVLHV DVDRLSEVRK SYEDHFIDRF DGLSFEERDI TYNFEFKKFL
201: EDFTDDEIGG IQGNSKKIKS LDELDPEIQS IVRLSDAYGA EGELGIVLSE KFMEHDAYCM FDALMNGVHG CVAMAGFFAY SPASGSHTGL PPVLEASTAF
301: YHLLSFVDSS LHSHLVELGV EPQYFGLRWL RVLFGREFLL QDLLIVWDEI FSADNTTRTD ADNNTNQSYK IFDSPRGALI SGMAVSMILC LRSSLLATEN
401: AASCLQRLLN FPEKIDVRKI IEKAKSLQTL ALDDDVRSSA LSINDGFDQS ISPAVPARTN SFPSGSTSPK SPLIITPQSY WEDQWRVLHK AAEEEKKSPS
501: PIQKKKPWFR VKRLFRAESE PTHSAKSPNG KSEVKISSVA RNLLEDFNRQ LVSEPVEANP IDVVNNEDSS IRETEDINTD FETAAEESIV MEENSSDLFS
601: DPNSPLRDSN YIENDSDSSN ESNLFPDETV KDRETSVVDS PLSISSQPSM EFIVSLSKDQ ETSVVDSPLP VSSQPSIEFP VTQSNDEDNA ADKSVANIKE
701: RSKVLPGKFQ WFWKFGRNVT AEETRCNGVE SSKSDLVCSS ESHSLPQASS SGSKGDTDQN VMNTLKNLGN SMLEHIQVIE SVFQQERGQV QAGLIENLSK
801: NNLVEKGQVT AMTALKELRK ISNLLLEM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)