AT4G29950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G19240.1); Has 1856 Blast hits to 1473 proteins in 235 species: Archae - 2; Bacteria - 59; Metazoa - 791; Fungi - 326; Plants - 250; Viruses - 6; Other Eukaryotes - 422 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14657464..14660370 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93183.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.67 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||
| Length | 828 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVPSEIESLG DESDRRFANL RGLRWRVNLG VLPFQSSSID DLRKATAESR RRYAALRRRL LIDPHLSKDV RNSPDLSIDN PLSQNPDSTW GRFFRNAELE 101: KTLDQDLSRL YPEHWSYFQA PGCQGMLRRI LLLWCLKHPE YGYRQGMHEL LAPLLYVLHV DVDRLSEVRK SYEDHFIDRF DGLSFEERDI TYNFEFKKFL 201: EDFTDDEIGG IQGNSKKIKS LDELDPEIQS IVRLSDAYGA EGELGIVLSE KFMEHDAYCM FDALMNGVHG CVAMAGFFAY SPASGSHTGL PPVLEASTAF 301: YHLLSFVDSS LHSHLVELGV EPQYFGLRWL RVLFGREFLL QDLLIVWDEI FSADNTTRTD ADNNTNQSYK IFDSPRGALI SGMAVSMILC LRSSLLATEN 401: AASCLQRLLN FPEKIDVRKI IEKAKSLQTL ALDDDVRSSA LSINDGFDQS ISPAVPARTN SFPSGSTSPK SPLIITPQSY WEDQWRVLHK AAEEEKKSPS 501: PIQKKKPWFR VKRLFRAESE PTHSAKSPNG KSEVKISSVA RNLLEDFNRQ LVSEPVEANP IDVVNNEDSS IRETEDINTD FETAAEESIV MEENSSDLFS 601: DPNSPLRDSN YIENDSDSSN ESNLFPDETV KDRETSVVDS PLSISSQPSM EFIVSLSKDQ ETSVVDSPLP VSSQPSIEFP VTQSNDEDNA ADKSVANIKE 701: RSKVLPGKFQ WFWKFGRNVT AEETRCNGVE SSKSDLVCSS ESHSLPQASS SGSKGDTDQN VMNTLKNLGN SMLEHIQVIE SVFQQERGQV QAGLIENLSK 801: NNLVEKGQVT AMTALKELRK ISNLLLEM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)