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AT4G29940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : pathogenesis related homeodomain protein A
Curator
Summary (TAIR10)
Homeodomain protein (PRHA). Expression of the gene differs in various vegetative and floral plant tissues and is positively influenced by the phytohormone auxin. It is often associated with regions of developing vascular tissue. The prha promoter is highly responsive to the synthetic auxin, naphthalene acetic acid, in transient assays using tobacco protoplasts. The PRHA protein has the capacity to bind to TAATTG core sequence elements but requires additional adjacent bases for high-affinity binding.
Computational
Description (TAIR10)
pathogenesis related homeodomain protein A (PRHA); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (TAIR:AT3G19510.1); Has 20197 Blast hits to 13808 proteins in 1056 species: Archae - 100; Bacteria - 2032; Metazoa - 7887; Fungi - 1709; Plants - 882; Viruses - 177; Other Eukaryotes - 7410 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQQAeggNOG:KOG4299EMBL:AL050352EMBL:AL161575EMBL:CP002687EMBL:L21991EMBL:U48864
EnsemblPlants:AT4G29940EnsemblPlants:AT4G29940.1entrez:829117ExpressionAtlas:P48785Gene3D:1.10.10.60Gene3D:3.30.40.10GeneID:829117
Genevisible:P48785GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006952GO:GO:0008270GO:GO:0009733
GO:GO:0043565GO:GO:0045893hmmpanther:PTHR12628hmmpanther:PTHR12628:SF10HOGENOM:HOG000115692InParanoid:P48785IntAct:P48785
InterPro:IPR001356InterPro:IPR001965InterPro:IPR009057InterPro:IPR011011InterPro:IPR013083InterPro:IPR019786InterPro:IPR019787
iPTMnet:P48785MINT:MINT-145050ncoils:CoilOMA:NEETVCGPaxDb:P48785Pfam:P48785Pfam:PF00046
Pfam:PF00628Pfscan:PS50016Pfscan:PS50071PhylomeDB:P48785PIR:T08555PRIDE:P48785PRO:PR:P48785
PROSITE:PS01359PROSITE:PS50016PROSITE:PS50071ProteinModelPortal:P48785Proteomes:UP000006548RefSeq:NP_194723.1scanprosite:PS01359
SMART:SM00249SMART:SM00389SMR:P48785STRING:3702.AT4G29940.1SUPFAM:SSF46689SUPFAM:SSF57903TAIR:AT4G29940
tair10-symbols:PRHAUniGene:At.19983UniProt:P48785
Coordinates (TAIR10) chr4:-:14648346..14652710
Molecular Weight (calculated) 90662.10 Da
IEP (calculated) 4.57
GRAVY (calculated) -1.06
Length 796 amino acids
Sequence (TAIR10)
(BLAST)
001: MEESETKGRI SQETDKACVS VERIGSTLLS SFVKKGKEVS NKRNSKQNKR KAEEELCSKS RTKKYSRGWV RCEEMEEEKV KKTRKRKSKR QQKDNKVEVD
101: DSLRLQRRTR YLLIKMKMQQ NLIDAYATEG WKGQSREKIR PDKELERARK EILNCKLGLR DAIRQLDLLS SVGSMEEKVI ASDGSIHHDH IFCAECNSRE
201: AFPDNDIILC DGTCNRAFHQ KCLDPPLETE SIPPGDQGWF CKFCDCKIEI IDTMNAQIGT HFPVDSNWQD IFNEEASLPI GSEATVNNEA DWPSDDSKDD
301: DYDPEMRENG GGNSSNVSGD GGGDNDEESI STSLSLSSDG VALSTGSWEG HRLSNMVEQC ETSNEETVCG PRQRRTVDYT QLYYEMFGKD AVLQEQGSED
401: EDWGPNDRRK RKRESDAGST LVTMCESSKK DQDVVETLEQ SERDSVSVEN KGGRRRMFRL PRNAVEKLRQ VFAETELPSK AVRDRLAKEL SLDPEKVNKW
501: FKNTRYMALR NRKTESVKQP GDSKTVSGGD SGPEAVMENN TETNEVQDTL DDTVPPGFDA TNQNILSPCN NNQEEFQQEN VSFPSPTDES QQYLEQNDSS
601: FVLVPHEKQS SEISLKTAVE ENETESKMMK EPHEELSSEM SLKTAAEEKE TESKMIEEPH EELSREMSLK TAVEEKETES KMMEEPHDEL NSEMSLSTAV
701: EEKETGSKMT EESHEELSNE MSLEEKETGR KMTEEEELEA VMEMLCRTEN KLLDVTQRLD RFKTPKGRKK LGNSSSPLLE EDSVVYVPIA EIKEKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)