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AT4G29930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G57150.1); Has 2195 Blast hits to 2191 proteins in 139 species: Archae - 0; Bacteria - 2; Metazoa - 52; Fungi - 0; Plants - 2128; Viruses - 9; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT4G29930EnsemblPlants:AT4G29930.1entrez:829116hmmpanther:PTHR31945
hmmpanther:PTHR31945:SF9ncoils:CoilPfam:PF00010Pfscan:PS50888
Coordinates (TAIR10) chr4:+:14644108..14647449
Molecular Weight (calculated) 29305.40 Da
IEP (calculated) 4.48
GRAVY (calculated) -0.56
Length 254 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDLDHEYKN YWETTMFFQN QELEFDSWPM EEAFSGSGES SSPDGAATSP ASSKNVVSER NRRQKLNQRL FALRSVVPNI SKLDKASVIK DSIDYMQELI
101: DQEKTLEAEI RELESRSTLL ENPVRDYDCN FAETHLQDFS DNNDMRSKKF KQMDYSTRVQ HYPIEVLEMK VTWMGEKTVV VCITCSKKRE TMVQLCKVLE
201: SLNLNILTTN FSSFTSRLST TLFLQADEEE SSAVEAKIQM AIAAYNDPNC LINF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)