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AT4G29820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homolog of CFIM-25
Curator
Summary (TAIR10)
Encodes a homolog of the protein CFI-25, a polyadenylation factor subunit.
Computational
Description (TAIR10)
homolog of CFIM-25 (CFIM-25); CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor, 25kDa subunit (InterPro:IPR016706); BEST Arabidopsis thaliana protein match is: Cleavage/polyadenylation specificity factor, 25kDa subunit (TAIR:AT4G25550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:14391eggNOG:ENOG410XS8ZeggNOG:KOG1689EMBL:AL050352EMBL:AL161575EMBL:AY048229EMBL:AY085984
EMBL:AY091704EMBL:CP002687EnsemblPlants:AT4G29820EnsemblPlants:AT4G29820.1entrez:829104Gene3D:3.90.79.10GeneID:829104
Genevisible:Q94AF0GO:GO:0003729GO:GO:0005849GO:GO:0006378GO:GO:0016787GO:GO:0046872Gramene:AT4G29820.1
hmmpanther:PTHR13047hmmpanther:PTHR13047:SF1HOGENOM:HOG000161320InParanoid:Q94AF0IntAct:Q94AF0InterPro:IPR015797InterPro:IPR016706
KEGG:ath:AT4G29820KO:K14397OMA:AWILNETPANTHER:PTHR13047PaxDb:Q94AF0Pfam:PF13869Pfam:Q94AF0
PhylomeDB:Q94AF0PIR:T08543PIRSF:PIRSF017888PRIDE:Q94AF0PRO:PR:Q94AF0ProteinModelPortal:Q94AF0Proteomes:UP000006548
Reactome:R-ATH-72163RefSeq:NP_567835.1SMR:Q94AF0STRING:3702.AT4G29820.1SUPFAM:SSF55811TAIR:AT4G29820tair10-symbols:ATCFIM-25
tair10-symbols:CFIM-25UniGene:At.26190UniProt:Q94AF0
Coordinates (TAIR10) chr4:-:14596047..14597317
Molecular Weight (calculated) 25562.40 Da
IEP (calculated) 8.59
GRAVY (calculated) -0.19
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEEARALDM EEISDNTTRR NDVVHDLMVD LYPLSSYYFG SKEALRVKDE IISDRVIRLK SNYAAHGLRT CVEAVLLVEL FKHPHVLLLQ YRNSIFKLPG
101: GRLRPGESDI EGLKRKLASK LSVNENVGVS GYEVGECIGM WWRPNFETLM YPFLPPNIKH PKECTKLFLV RLPVHQQFVV PKNFKLLAVP LCQLHENEKT
201: YGPIMSQIPK LLSKFSFNMM EI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)