AT4G29690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.762 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Alkaline-phosphatase-like family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Alkaline-phosphatase-like family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process, nucleotide metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: Alkaline-phosphatase-like family protein (TAIR:AT4G29700.1); Has 2123 Blast hits to 2102 proteins in 549 species: Archae - 19; Bacteria - 886; Metazoa - 669; Fungi - 140; Plants - 106; Viruses - 6; Other Eukaryotes - 297 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:14541084..14542457 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51263.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.60 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||
| Length | 457 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTKSKPGRSG FSGYILYKLS LTVLIVLSVA VTANGSDSPS SYVRRPQPPK KLNKPVVLLI SCDGFRFGYQ FKTETPNIDL LISRGTEAKT GLIPVFPTMT 101: FPNHYSIATG LYPASHGIIM NKFTDPVSGE LFNRNLNPKW WLGEPLWVTA VNQGLMAATY FWPGADVHKG SWNCPKGFCK APYNVSVPLE ERVDTILNYF 201: DLPEREIPDF MALYFDEPDI QGHEYGPDDP RVTEAVSKVD KMIGRIIMGL EKRKVFSDVH VILLGDHGMV TNCDKKVIYI DDLADWIKIP ADWIQDYSPV 301: LAMNPRWGKD VKNPGQKNAE LVRKMNEALS SGKVANGEFL QVYLKENLPQ RLHYSDSSRI PPIIGMVGEG LMVKQNRTYV QECSGTHGYD NMFFSMRSIF 401: VGYGPRFRRG IKVPSFENVQ VYNAVAEILG LRPAPNNGSS LFTRSLLLPF GETSQVE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)