AT4G29680.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.953 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Alkaline-phosphatase-like family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Alkaline-phosphatase-like family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process, nucleotide metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: Alkaline-phosphatase-like family protein (TAIR:AT4G29690.1); Has 2446 Blast hits to 2426 proteins in 629 species: Archae - 13; Bacteria - 1090; Metazoa - 671; Fungi - 207; Plants - 107; Viruses - 6; Other Eukaryotes - 352 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:14538067..14539557 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54681.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.73 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||
| Length | 496 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MISGDTLSAK KPKSVPQEED QDPPSQSIAL LDNHTDSSGS DSSTRSISSC FIFTSLLLVT CIALSAASAF AFLFFSSQKP VLSLNQISKS PAFDRSVARP 101: LKKLDKPVVL LISSDGFRFG YQFKTKLPSI HRLIANGTEA ETGLIPVFPT LTFPNHYSIV TGLYPAYHGI INNHFVDPET GNVFTMASHE PEWWLGEPLW 201: ETVVNQGLKA ATYFWPGSEV HKGSWNCPQG LCQNYNGSVP FDDRVDTILS YFDLPSNEIP SFMTLYFEDP DHQGHQVGPD DPQITEAVVN IDRLIGRLID 301: GLEKRGIFED VTMIMVGDHG MVGTCDKKLV VLDDLAPWIK IPSSWVQYYT PLLAIQPPSG HDAADIVAKI NEGLSSGKVE NGKYLKVYLK EDLPSRLHYV 401: DSDRIPPIIG LVDEGFKVEQ KKSKAKECGG AHGYDNAFFS MRTIFIGHGP MFSKGRKVPS FENVQIYNVI SSILGLKAAP NNGSDEFSSS ILLPRV |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)