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AT4G29440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.714
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Regulator of Vps4 activity in the MVB pathway protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Regulator of Vps4 activity in the MVB pathway protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT2G19710.1); Has 13682 Blast hits to 8543 proteins in 697 species: Archae - 14; Bacteria - 1875; Metazoa - 6005; Fungi - 2284; Plants - 648; Viruses - 80; Other Eukaryotes - 2776 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YG52eggNOG:KOG2027EMBL:CP002687EnsemblPlants:AT4G29440EnsemblPlants:AT4G29440.1entrez:829065ExpressionAtlas:F4JNM2
GeneID:829065GO:GO:0015031Gramene:AT4G29440.1hmmpanther:PTHR12161hmmpanther:PTHR12161:SF13InParanoid:F4JNM2InterPro:IPR005061
iPTMnet:F4JNM2ncoils:CoilOMA:PQFDTEDPANTHER:PTHR12161PaxDb:F4JNM2Pfam:PF03398PRIDE:F4JNM2
ProteinModelPortal:F4JNM2Proteomes:UP000006548RefSeq:NP_194673.2SMR:F4JNM2STRING:3702.AT4G29440.1TAIR:AT4G29440UniGene:At.27853
UniProt:F4JNM2
Coordinates (TAIR10) chr4:-:14473942..14477721
Molecular Weight (calculated) 119296.00 Da
IEP (calculated) 6.83
GRAVY (calculated) -0.96
Length 1090 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKKVLHRSFK PAKCKIALQM AASRLKILKN KKDTQIKQLR RELAHLLESG QTQTAKIRVE HVVREEKTVA AYELVGIYCE LLVARLGVID SQKTCPNDLK
0101: EAVASVLYAS QRLTDVGELS DIVKHFSAKY GKDFVSAAIG LQPDSGVSRL LVEKLSVKAP DGPTKIKILT EIATQHNVTW EAESLVESDP KETMSASGAS
0201: SSVSQPATGI KSESSRIQNN QPPVFQAAAT VNVSQNSYAT DGRSSSRMTS TDFNVGKTPD HYHQDPKPSG DRVDGREHRD HNPGHGDTSP FETKFVDATS
0301: AARAAAESAE RASFAARRAA ELSSKERMMM MQNSTESRNS SSYENLRSNP PHSRTSSSNM QGGGFGKEEL LKSNNRQVDQ STTTTRAESS KKTVDELSEN
0401: TSWRRGHSRE NSLEMRPNDS FAKIGREKQQ PGMDDINLSS SADVLNKKQS SRASSHSPSS NFSDDNDVTA LDHIDSPSIF EENKFQSTVG DRESYNDSPV
0501: VVVAPAFDDY SSFFDKPQFD TEDAYHDEPE QGLGFSLLGS SSKTSDHMPT EISSWSLEGH KDLGKLSSAS TSQVLEKEKP SSPPTFDDGP TSPPASLHEP
0601: EPSAKFDDYD RDSESEEDNL GRLSGRAEGK SKLTAQKSHM SEGPDDLGRY FFPSDTEDQG DDSKTQEESD AETPTGLKFG PLASGLENET TLPSYGSSPP
0701: RDKTSSKSIK EYLPTEVDPS RSSSLQTASS SSIRNELYTQ KASNSDKRPS SIPPDSSSSD DESDMELPKR VSFRYQEKRT ESRTRPTHLH SGVSHKDLEE
0801: EIPTRASTRS QDRRTHKTTP ASASASYFHT MSSDDEDEKE VHRDTAHIQT RPYISISRRT KGQERRPSLV TAKIDKVSFD EESPPKLSPE AKPLTKQQGS
0901: ASSLSYLPKT EKVSHDQESH PKLGLGAKPL IKQQGSASSL SFLPKTNKAS PDQDSPPKLV PKEKPAAKQR GSASSLSFLP KTDKASPDQD SPPKLLPKEK
1001: PAAKQQGSAT SSSSLPKTEK ISHYRESPSK LTPEAKSMAK QEGLASSSSS LPKTVTSPDP ETPAKEKASH VHPKLPDYDD IFAKLGALRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)