AT4G29440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.817 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Regulator of Vps4 activity in the MVB pathway protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Regulator of Vps4 activity in the MVB pathway protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT2G19710.1); Has 13682 Blast hits to 8543 proteins in 697 species: Archae - 14; Bacteria - 1875; Metazoa - 6005; Fungi - 2284; Plants - 648; Viruses - 80; Other Eukaryotes - 2776 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:14473942..14477721 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 119296.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.83 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.96 | ||||||||||||||||||||||||||||||||
| Length | 1090 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKKVLHRSFK PAKCKIALQM AASRLKILKN KKDTQIKQLR RELAHLLESG QTQTAKIRVE HVVREEKTVA AYELVGIYCE LLVARLGVID SQKTCPNDLK 0101: EAVASVLYAS QRLTDVGELS DIVKHFSAKY GKDFVSAAIG LQPDSGVSRL LVEKLSVKAP DGPTKIKILT EIATQHNVTW EAESLVESDP KETMSASGAS 0201: SSVSQPATGI KSESSRIQNN QPPVFQAAAT VNVSQNSYAT DGRSSSRMTS TDFNVGKTPD HYHQDPKPSG DRVDGREHRD HNPGHGDTSP FETKFVDATS 0301: AARAAAESAE RASFAARRAA ELSSKERMMM MQNSTESRNS SSYENLRSNP PHSRTSSSNM QGGGFGKEEL LKSNNRQVDQ STTTTRAESS KKTVDELSEN 0401: TSWRRGHSRE NSLEMRPNDS FAKIGREKQQ PGMDDINLSS SADVLNKKQS SRASSHSPSS NFSDDNDVTA LDHIDSPSIF EENKFQSTVG DRESYNDSPV 0501: VVVAPAFDDY SSFFDKPQFD TEDAYHDEPE QGLGFSLLGS SSKTSDHMPT EISSWSLEGH KDLGKLSSAS TSQVLEKEKP SSPPTFDDGP TSPPASLHEP 0601: EPSAKFDDYD RDSESEEDNL GRLSGRAEGK SKLTAQKSHM SEGPDDLGRY FFPSDTEDQG DDSKTQEESD AETPTGLKFG PLASGLENET TLPSYGSSPP 0701: RDKTSSKSIK EYLPTEVDPS RSSSLQTASS SSIRNELYTQ KASNSDKRPS SIPPDSSSSD DESDMELPKR VSFRYQEKRT ESRTRPTHLH SGVSHKDLEE 0801: EIPTRASTRS QDRRTHKTTP ASASASYFHT MSSDDEDEKE VHRDTAHIQT RPYISISRRT KGQERRPSLV TAKIDKVSFD EESPPKLSPE AKPLTKQQGS 0901: ASSLSYLPKT EKVSHDQESH PKLGLGAKPL IKQQGSASSL SFLPKTNKAS PDQDSPPKLV PKEKPAAKQR GSASSLSFLP KTDKASPDQD SPPKLLPKEK 1001: PAAKQQGSAT SSSSLPKTEK ISHYRESPSK LTPEAKSMAK QEGLASSSSS LPKTVTSPDP ETPAKEKASH VHPKLPDYDD IFAKLGALRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)