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AT4G29400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3531)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3531); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3531 (InterPro:IPR021920); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3531) (TAIR:AT5G08400.2); Has 315 Blast hits to 315 proteins in 83 species: Archae - 0; Bacteria - 120; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIFNeggNOG:ENOG4111K4HEMBL:AY735656EMBL:AY924824
EMBL:CP002687EnsemblPlants:AT4G29400EnsemblPlants:AT4G29400.1entrez:829061
GeneID:829061Gramene:AT4G29400.1hmmpanther:PTHR33102hmmpanther:PTHR33102:SF2
HOGENOM:HOG000232709IntAct:Q5XV66InterPro:IPR021920KEGG:ath:AT4G29400
OMA:NMTSEESPfam:PF12049PhylomeDB:Q5XV66Proteomes:UP000006548
RefSeq:NP_194669.2STRING:3702.AT4G29400.1TAIR:AT4G29400UniGene:At.51036
UniProt:Q5XV66
Coordinates (TAIR10) chr4:+:14466350..14467980
Molecular Weight (calculated) 34642.00 Da
IEP (calculated) 5.05
GRAVY (calculated) -0.61
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRFQCFLHL LQPSMAKNNS NHSNICLHNL APFRVTDTIP VQKIQELRAN RSRESGKLRV NGIGREMEEG VEEFEEVDDG DDDEVEDEFS AKKRGVYRAK
101: KEKIDYDKDP EFADILGDCL DNPDKAQKKM EERLRKKRNK ILHTKTGSAT SMPVTFNKFE YSNSYMWLEF YNTPLDKDIA LISDTIRSWH ILGRLGGYNS
201: MNMQLSQAPL DKRPNYDAIL GANVEPTTFY NIGDLEVQDN VARIWLDIGT SEPLILDVLI NALTQISSDY VGIKKVVFGG SEFESWKENM TSEESGFRVH
301: KI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)