suba logo
AT4G29360.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 0.974
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 14517339
SwissProt : extracellular 16381842
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 14517339
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26748395 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22318864 (2012): plasma membrane
  • PMID:14517339 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-Glycosyl hydrolases family 17 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT5G56590.1); Has 2836 Blast hits to 2784 proteins in 145 species: Archae - 0; Bacteria - 6; Metazoa - 3; Fungi - 20; Plants - 2794; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G29360-MONOMERBioCyc:ARA:GQT-165-MONOMERCAZy:CBM43CAZy:GH17EC:3.2.1.39eggNOG:ENOG410IIXFeggNOG:ENOG410YA1S
EMBL:AL161574EMBL:AY072133EMBL:AY088354EMBL:AY096465EMBL:CP002687EnsemblPlants:AT4G29360EnsemblPlants:AT4G29360.1
entrez:829057ExpressionAtlas:Q8VYE5Gene3D:3.20.20.80GeneID:829057Genevisible:Q8VYE5GO:GO:0005576GO:GO:0005618
GO:GO:0005975GO:GO:0006952GO:GO:0031225GO:GO:0042973GO:GO:0046658GO:GO:0071555hmmpanther:PTHR32227
hmmpanther:PTHR32227:SF88HOGENOM:HOG000238220InParanoid:Q8VYE5InterPro:IPR000490InterPro:IPR012946InterPro:IPR013781InterPro:IPR017853
iPTMnet:Q8VYE5KEGG:ath:AT4G29360OMA:SKKHSAFPaxDb:Q8VYE5Pfam:PF00332Pfam:PF07983Pfam:Q8VYE5
PhylomeDB:Q8VYE5PIR:F85342PRIDE:Q8VYE5PRO:PR:Q8VYE5PROSITE:PS00587ProteinModelPortal:Q8VYE5Proteomes:UP000006548
RefSeq:NP_567828.3RefSeq:NP_849556.1scanprosite:PS00587SMART:SM00768SMR:Q8VYE5STRING:3702.AT4G29360.1SUPFAM:SSF51445
TAIR:AT4G29360TMHMM:TMhelixUniGene:At.31933UniProt:Q8VYE5
Coordinates (TAIR10) chr4:-:14451562..14453687
Molecular Weight (calculated) 57662.20 Da
IEP (calculated) 4.76
GRAVY (calculated) -0.03
Length 534 amino acids
Sequence (TAIR10)
(BLAST)
001: MGQRLNLVFW IFVSILAFLN FGMASKIGIC YGRNADNLPS PNRVSELIQH LNIKFVRIYD ANIDVLKAFA NTGIELMIGV PNADLLAFAQ FQSNVDTWLS
101: NNILPYYPST KITSISVGLE VTEAPDNATG LVLPAMRNIH TALKKSGLDK KIKISSSHSL AILSRSFPPS SASFSKKHSA FLKPMLEFLV ENESPFMIDL
201: YPYYAYRDST EKVPLEYALF ESSSQVVDPA TGLLYSNMFD AQLDAIYFAL TAMSFKTVKV MVTESGWPSK GSPKETAATP ENALAYNTNL IRHVIGDPGT
301: PAKPGEEIDV YLFSLFNENR KPGIESERNW GMFYANGTNV YALDFTGENT TPVSPTNSTT GTSPSPSSSP IINGNSTVTI GGGGGGGTKK WCIASSQASV
401: TELQTALDWA CGPGNVDCSA VQPDQPCFEP DTVLSHASYA FNTYYQQSGA SSIDCSFNGA SVEVDKDPSY GNCLYMIAPA TDGFNRTMAG NITGNITAID
501: SPLASPSSTN EAFRQMVVAV SVLLPCFVVC SSIW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)