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AT4G29350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22215637 (2012): plasma membrane
  • PMID:20423899 (2010): plastid
  • PMID:18431481 (2008): plastid
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : profilin 2
Curator
Summary (TAIR10)
Encodes profilin2, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Expressed in vegetative organs. The first intron of PRF2 enhances gene expression.
Computational
Description (TAIR10)
profilin 2 (PFN2); FUNCTIONS IN: actin binding, protein binding; INVOLVED IN: actin polymerization or depolymerization, cytoskeleton organization; LOCATED IN: chloroplast, plasma membrane, actin cytoskeleton, cytoplasm; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Profilin/allergen (InterPro:IPR002097), Profilin, plant (InterPro:IPR005455); BEST Arabidopsis thaliana protein match is: profilin 1 (TAIR:AT2G19760.1); Has 925 Blast hits to 924 proteins in 248 species: Archae - 0; Bacteria - 2; Metazoa - 138; Fungi - 123; Plants - 584; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).
Protein Annotations
BioGrid:14343eggNOG:ENOG41126PDeggNOG:KOG1755EMBL:AL161574EMBL:AY074350EMBL:AY114048EMBL:CP002687
EMBL:U43323EMBL:U43326EMBL:U43591EnsemblPlants:AT4G29350EnsemblPlants:AT4G29350.1entrez:829056ExpressionAtlas:Q42418
GeneID:829056Genevisible:Q42418GO:GO:0003785GO:GO:0005737GO:GO:0005886GO:GO:0005938GO:GO:0008154
GO:GO:0009507GO:GO:0010229GO:GO:0015629GO:GO:0042989GO:GO:0048366GO:GO:0048527Gramene:AT4G29350.1
hmmpanther:PTHR11604hmmpanther:PTHR11604:SF7HOGENOM:HOG000171591InParanoid:Q42418IntAct:Q42418InterPro:IPR005455InterPro:IPR027310
KEGG:ath:AT4G29350KO:K05759OMA:DEMKFISPANTHER:PTHR11604PaxDb:Q42418Pfam:PF00235Pfam:Q42418
PhylomeDB:Q42418PIR:E85342PRIDE:Q42418PRINTS:PR00392PRINTS:PR01640PRO:PR:Q42418PROSITE:PS00414
ProteinModelPortal:Q42418Proteomes:UP000006548RefSeq:NP_194664.1scanprosite:PS00414SMART:SM00392SMR:Q42418STRING:3702.AT4G29350.1
SUPFAM:SSF55770TAIR:AT4G29350tair10-symbols:PFN2tair10-symbols:PRF2tair10-symbols:PRO2UniGene:At.24227UniProt:C0Z3G0
UniProt:Q42418
Coordinates (TAIR10) chr4:+:14450135..14451119
Molecular Weight (calculated) 13998.70 Da
IEP (calculated) 4.67
GRAVY (calculated) -0.08
Length 131 amino acids
Sequence (TAIR10)
(BLAST)
001: MSWQSYVDDH LMCEVEGNHL THAAIFGQDG SVWAQSSAFP QLKPAEIAGI NKDFEEAGHL APTGLFLGGE KYMVVQGEAG AVIRGKKGPG GVTIKKTTQA
101: LVFGIYDEPM TGGQCNLVVE RLGDYLIESG L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)