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AT4G29270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HAD superfamily, subfamily IIIB acid phosphatase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HAD superfamily, subfamily IIIB acid phosphatase ; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT4G29260.1); Has 719 Blast hits to 714 proteins in 195 species: Archae - 0; Bacteria - 324; Metazoa - 0; Fungi - 0; Plants - 383; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G29270-MONOMERDNASU:829048eggNOG:ENOG410IVUWeggNOG:ENOG410YCRN
EMBL:AK227764EMBL:AL161574EMBL:AY084437EMBL:BT004812
EMBL:CP002687EnsemblPlants:AT4G29270EnsemblPlants:AT4G29270.1entrez:829048
Gene3D:3.40.50.1000GeneID:829048GO:GO:0003993Gramene:AT4G29270.1
hmmpanther:PTHR31284hmmpanther:PTHR31284:SF14HOGENOM:HOG000237598InterPro:IPR005519
InterPro:IPR010028InterPro:IPR014403InterPro:IPR023214KEGG:ath:AT4G29270
OMA:SIASYCEPfam:PF03767PhylomeDB:Q9M0F4PIR:T13440
PIRSF:PIRSF002674Proteomes:UP000006548RefSeq:NP_194656.1SMR:Q9M0F4
STRING:3702.AT4G29270.1SUPFAM:SSF56784TAIR:AT4G29270TIGRfam:TIGR01675
TIGRFAMs:TIGR01675TMHMM:TMhelixUniGene:At.31944UniProt:Q9M0F4
Coordinates (TAIR10) chr4:-:14423797..14424848
Molecular Weight (calculated) 28747.80 Da
IEP (calculated) 8.80
GRAVY (calculated) -0.39
Length 256 amino acids
Sequence (TAIR10)
(BLAST)
001: MTFSRSSSIT FFIVALFTVL INPAISSRAA SFIKLPRSSI ASYCESWRLA AETNNVGPWK VIPSQCENYI KNYINGGQFD KDYDVVASYA IDYAKTVKVG
101: GDGKDAWVFD IDETLLSNIE YYKANGYGSE PYDSIKYNEV VEKGKDPGYD ASLRLYKALK KLGFTIILLT GRDEGHRSVT EKNLRDAGYF GWNRLLLRGQ
201: NDQGKTATQY KSEQRSQVVK EGYTIHGNTG DQWSDLLGFA VASRSFKVPN PMYYVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)