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AT4G29240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G19780.1); Has 63461 Blast hits to 20951 proteins in 903 species: Archae - 14; Bacteria - 2781; Metazoa - 8815; Fungi - 480; Plants - 47912; Viruses - 34; Other Eukaryotes - 3425 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIN9eggNOG:ENOG410YAYQEMBL:AL161574EMBL:AY091036
EMBL:AY117248EMBL:CP002687EnsemblPlants:AT4G29240EnsemblPlants:AT4G29240.1
entrez:829045Gene3D:3.80.10.10GeneID:829045Gramene:AT4G29240.1
hmmpanther:PTHR27000hmmpanther:PTHR27000:SF4HOGENOM:HOG000239260IntAct:Q9M0F7
InterPro:IPR001611InterPro:IPR013210InterPro:IPR032675KEGG:ath:AT4G29240
OMA:AMSCFRIPfam:PF00560Pfam:PF08263Pfscan:PS51450
PhylomeDB:Q9M0F7PIR:T13435PROSITE:PS51450Proteomes:UP000006548
RefSeq:NP_194653.1SMR:Q9M0F7STRING:3702.AT4G29240.1SUPFAM:SSF52058
TAIR:AT4G29240TMHMM:TMhelixUniGene:At.27959UniProt:Q9M0F7
Coordinates (TAIR10) chr4:+:14418826..14420073
Molecular Weight (calculated) 44204.70 Da
IEP (calculated) 7.58
GRAVY (calculated) 0.04
Length 415 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKKKKGSNN FKLLCFFLFL GGLVQTDASF GVGGGVGVGI GGGGGGGGGG VWVGGGYNNG GNRNAVPGSS APNRVAYNAL QVWKSAMRED PSNVLKTWVG
101: SDVCSYKGVF CSGQSITSID LNHANLKGTL VKDLALLSDL NILHLNSNRF SGQIPDSFKS LASLQELDLS NNKLSGPFPL VTLYIPNLVY LDLRFNSLTG
201: FIPEELFNKR LDAILLNNNQ FVGEIPRNLG NSPASVINLA NNRFSGEIPT SFGLTGSRVK EVLLLNNQLT GCIPESVGMF SEIEVFDVSY NALMGHVPDT
301: ISCLSAIEIL NLAHNKFSGE VPDLVCSLRN LINLTVAFNF FSGFSSECSS RVSFGFDFVG NCIPGRNSQR PQPDCSGYSG GAMSCFRIPT QPLACAAISV
401: GLRESNNQYY TSSPP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)