AT4G29100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G20100.1); Has 1864 Blast hits to 1723 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 29; Plants - 923; Viruses - 0; Other Eukaryotes - 836 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14341140..14344575 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44587.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.79 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.76 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 407 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNRGVLESSP VQQLMAAGNP NWWNVSGGMR PPPPLMGHQQ APLPPHMTPN NNYLRPRMMP TPFPHFLPSP ATSSSSSSSS PSLPNNPNLS SWLESNDLPP 101: ESWSLSQLLL GGLMMGEEER LEMMNHHNHH DEQQHHGFQG KIRLENWEEQ VLSHQQASMV AVDIKQEGNI NNNNGYVISS PNSPPNKSCV TTTTTTSLNS 201: NDDNINNNNN MLDFSSNHNG LHLSEGRHTP PDRSSECNSL EIGGSTNKKP RLQPSPSSQS TLKVRKEKLG GRIAALHQLV SPFGKTDTAS VLSEAIGYIR 301: FLQSQIEALS HPYFGTTASG NMRHQQHLQG DRSCIFPEDP GQLVNDQCMK RRGASSSSTD NQNASEEPKK DLRSRGLCLV PISCTLQVGS DNGADYWAPA 401: LGSAGFH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)