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AT4G29100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G20100.1); Has 1864 Blast hits to 1723 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 29; Plants - 923; Viruses - 0; Other Eukaryotes - 836 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IF2XeggNOG:ENOG410YDA0EMBL:AF488634EMBL:AL078470EMBL:AL161574EMBL:AY081316EMBL:BT000121
EMBL:CP002687EnsemblPlants:AT4G29100EnsemblPlants:AT4G29100.1entrez:829031Gene3D:4.10.280.10GeneID:829031Genevisible:Q8S3D1
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT4G29100.1hmmpanther:PTHR16223
hmmpanther:PTHR16223:SF53HOGENOM:HOG000005841InParanoid:Q8S3D1InterPro:IPR011598KEGG:ath:AT4G29100OMA:CNSLEIGPaxDb:Q8S3D1
Pfam:Q8S3D1Pfscan:PS50888PhylomeDB:Q8S3D1PIR:T08965PRIDE:Q8S3D1PRO:PR:Q8S3D1PROSITE:PS50888
ProteinModelPortal:Q8S3D1Proteomes:UP000006548RefSeq:NP_194639.1SMR:Q8S3D1STRING:3702.AT4G29100.1SUPFAM:SSF47459TAIR:AT4G29100
UniGene:At.3408UniProt:Q8S3D1
Coordinates (TAIR10) chr4:+:14341140..14344575
Molecular Weight (calculated) 44587.00 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.76
Length 407 amino acids
Sequence (TAIR10)
(BLAST)
001: MNRGVLESSP VQQLMAAGNP NWWNVSGGMR PPPPLMGHQQ APLPPHMTPN NNYLRPRMMP TPFPHFLPSP ATSSSSSSSS PSLPNNPNLS SWLESNDLPP
101: ESWSLSQLLL GGLMMGEEER LEMMNHHNHH DEQQHHGFQG KIRLENWEEQ VLSHQQASMV AVDIKQEGNI NNNNGYVISS PNSPPNKSCV TTTTTTSLNS
201: NDDNINNNNN MLDFSSNHNG LHLSEGRHTP PDRSSECNSL EIGGSTNKKP RLQPSPSSQS TLKVRKEKLG GRIAALHQLV SPFGKTDTAS VLSEAIGYIR
301: FLQSQIEALS HPYFGTTASG NMRHQQHLQG DRSCIFPEDP GQLVNDQCMK RRGASSSSTD NQNASEEPKK DLRSRGLCLV PISCTLQVGS DNGADYWAPA
401: LGSAGFH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)