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AT4G29080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phytochrome-associated protein 2
Curator
Summary (TAIR10)
phytochrome-associated protein 2 (PAP2)
Computational
Description (TAIR10)
phytochrome-associated protein 2 (PAP2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, regulation of translation; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indoleacetic acid-induced protein 8 (TAIR:AT2G22670.4); Has 2237 Blast hits to 2234 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 2235; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:14316eggNOG:ENOG410IJSBeggNOG:ENOG410YEX5EMBL:AF087936EMBL:AF332402EMBL:AJ458326EMBL:AL078470
EMBL:AL161574EMBL:AY053404EMBL:AY133516EMBL:CP002687EnsemblPlants:AT4G29080EnsemblPlants:AT4G29080.1entrez:829029
GeneID:829029Genevisible:Q9ZSY8GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009733GO:GO:0009734
Gramene:AT4G29080.1hmmpanther:PTHR31734hmmpanther:PTHR31734:SF5HOGENOM:HOG000238261InParanoid:Q9ZSY8IntAct:Q9ZSY8InterPro:IPR000270
InterPro:IPR003311InterPro:IPR033389KEGG:ath:AT4G29080KO:K14484OMA:SEFPTMEPANTHER:PTHR31734PaxDb:Q9ZSY8
Pfam:PF02309Pfam:Q9ZSY8Pfscan:PS51745PhylomeDB:Q9ZSY8PIR:T08963PRIDE:Q9ZSY8PRO:PR:Q9ZSY8
PROSITE:PS51745ProteinModelPortal:Q9ZSY8Proteomes:UP000006548RefSeq:NP_194637.1SMR:Q9ZSY8STRING:3702.AT4G29080.1SUPFAM:SSF54277
TAIR:AT4G29080tair10-symbols:IAA27tair10-symbols:PAP2UniGene:At.3406UniProt:Q9ZSY8
Coordinates (TAIR10) chr4:-:14323665..14325213
Molecular Weight (calculated) 33197.30 Da
IEP (calculated) 8.83
GRAVY (calculated) -0.53
Length 305 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVSVAAEHD YIGLSEFPTM EATTMSDKTK TRDNNNGLNF KATELRLGLP GSESPERVDS RFLALNKSSC PVSGAKRVFS DAINDSNKWV FSPGSTTATG
101: DVGSGSGPRT SVVKDGKSTT FTKPAVPVKE KKSSATAPAS KAQVVGWPPI RSFRKNSMAS SQSQKPGNNS ETEEAEAKSG PEQPCLYVKV SMEGAPYLRK
201: IDLKTYKSYL ELSSALEKMF SCFTIGQFGS HGGCGRDGLN ESRLTDLLRG SEYVVTYEDK DSDWMLVGDV PWEMFICSCK KLRIMKSSEA IGLAPRVMEK
301: CRSRN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)