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AT4G29060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : elongation factor Ts family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2726 (emb2726); FUNCTIONS IN: RNA binding, translation elongation factor activity; INVOLVED IN: translational elongation, response to cadmium ion, embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Translation elongation factor EFTs/EF1B (InterPro:IPR001816), Translation elongation factor EFTs/EF1B, dimerisation (InterPro:IPR014039), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Translation elongation factor Ts, conserved site (InterPro:IPR018101), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: translation elongation factor Ts (EF-Ts), putative (TAIR:AT4G11120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0264eggNOG:COG0539eggNOG:KOG1071EMBL:AL078470EMBL:AL161574EMBL:AY056792EMBL:CP002687
EnsemblPlants:AT4G29060EnsemblPlants:AT4G29060.1entrez:829027ExpressionAtlas:Q9SZD6Gene3D:2.40.50.140Gene3D:3.30.479.20GeneID:829027
GO:GO:0003746GO:GO:0005759GO:GO:0009507GO:GO:0009570GO:GO:0009941GO:GO:0046686GO:GO:0070125
Gramene:AT4G29060.1HAMAP:MF_00050hmmpanther:PTHR11741hmmpanther:PTHR11741:SF3HOGENOM:HOG000244107InterPro:IPR001816InterPro:IPR003029
InterPro:IPR009060InterPro:IPR012340InterPro:IPR014039InterPro:IPR018101InterPro:IPR022967ncoils:CoilOMA:RSGAFIT
PANTHER:PTHR11741Pfam:PF00575Pfam:PF00889Pfscan:PS50126PhylomeDB:Q9SZD6PIR:T08961PROSITE:PS01126
PROSITE:PS01127PROSITE:PS50126Proteomes:UP000006548RefSeq:NP_567820.1scanprosite:PS01126scanprosite:PS01127SMART:SM00316
SMR:Q9SZD6STRING:3702.AT4G29060.1SUPFAM:SSF46934SUPFAM:SSF50249SUPFAM:SSF54713TAIR:AT4G29060tair10-symbols:emb2726
TIGRfam:TIGR00116TIGRFAMs:TIGR00116UniGene:At.21764UniProt:Q9SZD6
Coordinates (TAIR10) chr4:+:14317744..14321315
Molecular Weight (calculated) 103788.00 Da
IEP (calculated) 4.65
GRAVY (calculated) -0.50
Length 953 amino acids
Sequence (TAIR10)
(BLAST)
001: MATITPSSIS NAWLIPGASF TVKKSDCSIK CSFSRKAGKQ ILSSTQRLVL PLSTSLRLFP THGRQFVLHP HRRATGTDVV AAVEEQDSTP VVAEDKETVA
101: SEKSDAPAPT SQSRGTARPG RKSEMPAVKN EELVPGATFT GKVRAIQPFG AFVDFGAFTD GLVHVSQLSD NFVKDVSSVV TIGQEVKVRL VEADIESKRI
201: SLTMRENDDP PKRQSGGSDK PRSGGKRDGS KGGGQRKGEG FNSKFAKGQM LDGVVKNLTR SGAFITIGEG EEGFLPTAEE ADDGIGSMMM GGSSLQAGQE
301: VKVRVLRIAR GRVTLTMKEE DDGKFDETTT QGVVHTATNP FMLAFRKNEE IAAFLDKREE EAEKPPVETP VEPEAEASVT SAEVEESVCV PAEVTSEEVP
401: SSETPKVVEE EVIATKAEDD SPEKEEQTET LAAAAEAEEV VPPIPETKSE EEIVENSIPP NSATDEVSSP EALASEEVEK EQVVAETPVD EVKTPAPVVT
501: EASSEESGNT ATAESIKGIS PALVKQLREE TGAGMMDCKN ALSESEGDMV KAQEYLRKKG LASADKKASR ATSEGRIGAY IHDSRIGVLL EVNCETDFVS
601: RGDIFKELVD DLAMQVAACP QVEYLVTEDV SEEIVKKEKE IEMQKEDLLS KPEQIREKIV DGRIKKRLDS LALLEQPYIK DDKVIVKDLV KQRIATIGEN
701: IKVKRFVRYT LGEGLEKKSQ DFAAEVAAQT AAKPKAKEEP KAEEAKEAVA SPPTTVVSAA LVKQLREETG AGMMDCKKAL AATGGDLEKA QEFLRKKGLS
801: SADKKSSRLA SEGRIGSYIH DSRIGVLIEV NCETDFVGRS EKFKELVDDL AMQAVANPQV QYVSIEDIPE EIKQKEKEIE MQREDLLSKP ENIREKIVEG
901: RISKRLGEWA LLEQPYIKDD SVLVKDLVKQ TVATLGENIK VRRFVKFTLG EDN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)