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AT4G29020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycine-rich protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 92355 Blast hits to 23750 proteins in 1587 species: Archae - 185; Bacteria - 38167; Metazoa - 25977; Fungi - 4591; Plants - 7302; Viruses - 1155; Other Eukaryotes - 14978 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JW56eggNOG:ENOG411059GEMBL:AL078470EMBL:AL161574
EMBL:AY050900EMBL:AY087268EMBL:AY096677EMBL:CP002687
EnsemblPlants:AT4G29020EnsemblPlants:AT4G29020.1entrez:829023ExpressionAtlas:Q9SZD2
GeneID:829023Gramene:AT4G29020.1OMA:SIVCTTRPIR:T08957
Proteomes:UP000006548RefSeq:NP_194631.1STRING:3702.AT4G29020.1TAIR:AT4G29020
TMHMM:TMhelixUniGene:At.48916UniProt:Q9SZD2
Coordinates (TAIR10) chr4:+:14305032..14305508
Molecular Weight (calculated) 13324.30 Da
IEP (calculated) 7.52
GRAVY (calculated) 0.76
Length 158 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVRCLAVFL VALMVSQAVT ATRPAPTKNV GAGLDDQKNF VAFAGVGGAA GIGGAGGVGA GLGGVAGGVG GVAGVLPVGG VGGGIGGLGG GVGGLGGLGG
101: LGGGSGLGHG VGGIGGDPGI GSGIGGLGGA GGLGGIGGVG GLGGIGGGSD CGGVIPHH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)