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AT4G29000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Tesmin/TSO1-like CXC domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tesmin/TSO1-like CXC domain-containing protein; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: Tesmin/TSO1-like CXC domain-containing protein (TAIR:AT2G20110.1); Has 1016 Blast hits to 666 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 285; Fungi - 4; Plants - 322; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110UR5eggNOG:KOG1171EMBL:AK118658EMBL:AL078470
EMBL:AL161574EMBL:BT005931EMBL:CP002687EnsemblPlants:AT4G29000
EnsemblPlants:AT4G29000.1entrez:829021GeneID:829021Genevisible:Q9SZD1
GO:GO:0003700GO:GO:0005634GO:GO:0006355GO:GO:0007275
GO:GO:0046872Gramene:AT4G29000.1hmmpanther:PTHR12446hmmpanther:PTHR12446:SF14
HOGENOM:HOG000082876InParanoid:Q9SZD1IntAct:Q9SZD1InterPro:IPR005172
InterPro:IPR028307InterPro:IPR033467KEGG:ath:AT4G29000OMA:PQKNGMP
PANTHER:PTHR12446PaxDb:Q9SZD1Pfam:PF03638Pfam:Q9SZD1
Pfscan:PS51634PhylomeDB:Q9SZD1PIR:T08955PRIDE:Q9SZD1
PRO:PR:Q9SZD1PROSITE:PS51634ProteinModelPortal:Q9SZD1Proteomes:UP000006548
RefSeq:NP_194629.1SMART:SM01114STRING:3702.AT4G29000.1TAIR:AT4G29000
UniGene:At.3404UniGene:At.48915UniProt:Q9SZD1
Coordinates (TAIR10) chr4:+:14293957..14296602
Molecular Weight (calculated) 64639.10 Da
IEP (calculated) 7.94
GRAVY (calculated) -0.61
Length 603 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEDGGGGEF PPKKDGVEEG FPTKKPARQL DFTGGSDEHS LSKPAAPTVV ATSVKPIISS SVPSTIRPGM TIAIGQVTQV RPTLPMATTM SNPPSQSQIV
101: NAPIRHPIPE SPKARGPRPN VEGRDGTPQK KKQCNCKHSR CLKLYCECFA SGTYCDGCNC VNCFNNVDNE PARREAVEAT LERNPFAFRP KIASSPHGGR
201: DKREDIGEVV LLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGEHSNHM AYLQQAANAA ITGAVGSSGF APSPAPKRRK
301: GQEILFNQAI KDSSRLSHFP QVNNGRTGGP TSGTSPSPVS RAGGNASSVP SKFVYRSLLA DIIQPHDVRA LCSVLVTVAG EAAKTSTDKR NEIENRVDDQ
401: TETSLASSAQ DQPQGNNNAA DVEMVATDHN QADKSGPEES NSDGVDASKV TPLSPATLAL MCDEQDTIFM VAAPSPNGSV DPNGCRPNSQ GQSEIYAEQE
501: RLVLTKFRDC LNRLISYAEI KESKCLSLAR MHIQPPAIAT VKTENGIQQQ VPIVNGASRT NCQPTLNKPQ PMQLMNTTSA APATATNTQH LQKPPALSEK
601: KDP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)