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AT4G28940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phosphorylase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phosphorylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: nucleoside metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Nucleoside phosphorylase (InterPro:IPR000845), Nucleoside phosphorylase, family 1 (InterPro:IPR018017); BEST Arabidopsis thaliana protein match is: Phosphorylase superfamily protein (TAIR:AT4G24340.1); Has 4063 Blast hits to 3116 proteins in 1287 species: Archae - 0; Bacteria - 3887; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0775eggNOG:ENOG410IGU3EMBL:CP002687EnsemblPlants:AT4G28940EnsemblPlants:AT4G28940.1entrez:829015Gene3D:3.40.50.1580
GeneID:829015GO:GO:0003824GO:GO:0009116Gramene:AT4G28940.1hmmpanther:PTHR21234hmmpanther:PTHR21234:SF19InParanoid:F4JM51
InterPro:IPR000845InterPro:IPR018017iPTMnet:F4JM51KEGG:ath:AT4G28940OMA:DEPILIFPANTHER:PTHR21234PaxDb:F4JM51
Pfam:PF01048PRIDE:F4JM51ProteinModelPortal:F4JM51Proteomes:UP000006548RefSeq:NP_194623.2SMR:F4JM51STRING:3702.AT4G28940.1
SUPFAM:SSF53167TAIR:AT4G28940UniGene:At.31970UniProt:F4JM51
Coordinates (TAIR10) chr4:+:14274414..14276920
Molecular Weight (calculated) 38486.30 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.02
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MGHFLIGFLV VVLSVGNVIE EANGEIPRTT LEKIERMNQK GPYLGIVAPN NYELNPLLGS KAYFPSSSLP FIDFAGRKFR FGKLSNQPVI IVMSGLGMVN
101: AGVTTQLLVS LFRLKGVLHY GIAGNADVNL EIGDVTIPQY WAHSGLWNWQ RYGDGIDNEL ALESGGDYTR EVGYLQFSKY SNRTDNLLNR VWYQPEEIFP
201: VTGTPEERQH VFWIPVDKSY LKLARKLEDT KLPQCVNTTC LPRPPKVTIV KRGMSASVFI DNAAYRTFLN SKFNATAVEM ESAAVALISH QQNLPFIVIR
301: ALSDLAGGGS DVSNEASIFS SLAAENSVDI LVKFVALLPP HESKIQSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)