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AT4G28880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : casein kinase I-like 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
casein kinase I-like 3 (ckl3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I-like 4 (TAIR:AT4G28860.1); Has 64022 Blast hits to 63665 proteins in 2312 species: Archae - 48; Bacteria - 11126; Metazoa - 24220; Fungi - 7316; Plants - 9570; Viruses - 322; Other Eukaryotes - 11420 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G28880-MONOMERDNASU:829009EC:2.7.11.1eggNOG:ENOG410XPGP
eggNOG:KOG1164EMBL:AK118601EMBL:AL035353EMBL:AL161573
EMBL:AY058842EMBL:AY079031EMBL:AY943852EMBL:CP002687
EnsemblPlants:AT4G28880EnsemblPlants:AT4G28880.1entrez:829009GeneID:829009
GO:GO:0004672GO:GO:0004674GO:GO:0005524GO:GO:0005634
GO:GO:0005737GO:GO:0009637GO:GO:0009640GO:GO:0009785
GO:GO:0016055GO:GO:0018105Gramene:AT4G28880.1hmmpanther:PTHR11909
hmmpanther:PTHR11909:SF97HOGENOM:HOG000182055IntAct:Q93Z18InterPro:IPR000719
InterPro:IPR008271InterPro:IPR011009InterPro:IPR017441KEGG:ath:AT4G28880
KO:K00924OMA:DAVHHNQPfam:PF00069Pfscan:PS50011
PhylomeDB:Q93Z18PIR:T04511PROSITE:PS00107PROSITE:PS00108
PROSITE:PS50011Proteomes:UP000006548RefSeq:NP_194617.2scanprosite:PS00107
scanprosite:PS00108SMART:SM00220SMR:Q93Z18STRING:3702.AT4G28880.1
SUPFAM:SSF56112TAIR:AT4G28880tair10-symbols:ckl3UniGene:At.70159
UniProt:Q93Z18
Coordinates (TAIR10) chr4:+:14251351..14254048
Molecular Weight (calculated) 46893.90 Da
IEP (calculated) 9.80
GRAVY (calculated) -0.57
Length 415 amino acids
Sequence (TAIR10)
(BLAST)
001: MERIIGGKYK LGRKIGGGSF GEIFLATHVD TFEIVAVKIE NSKTKHPQLL YEAKLYRILE GGSGIPRIKW FGVDGTENAL VMDLLGPSLE DLFVYCGRKF
101: SPKTVLMLAD QMLTRIEFVH SKGYLHRDIK PDNFLMGLGR KANQVYLIDF GLAKRYRDAN TNRHIPYREN KNLTGTARYA SCNTHLGIEQ SRRDDLESLG
201: YVLLYFLRGS LPWQGLKAVD KKQKYDKICE KKISTPIEVL CKNHPVEFAS YFHYCHTLTF DQRPDYGFLK RLFRDLFSRE GYEFDYIFDW TIIKYQQAQK
301: SRNQSQAVPG SSNPRAMPVD TSNHRGGPNI SYEAEASERV RSANAIGPSP QINNNTAAGR TPGFDHPVHK NMNMPSTSLS PAGTSKRNVG PETSNSGYGS
401: GNRTGWTSSF MSPEK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)