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AT4G28830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Putative RNA methylase (InterPro:IPR000241), DNA methylase, N-6 adenine-specific, conserved site (InterPro:IPR002052); Has 3625 Blast hits to 3623 proteins in 1319 species: Archae - 217; Bacteria - 2993; Metazoa - 122; Fungi - 3; Plants - 52; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).
Protein Annotations
DNASU:829004eggNOG:COG2263eggNOG:KOG3420EMBL:AK227501EMBL:BT005852EMBL:CP002687EnsemblPlants:AT4G28830
EnsemblPlants:AT4G28830.1entrez:829004ExpressionAtlas:Q84TF1Gene3D:3.40.50.150GeneID:829004GO:GO:0003676GO:GO:0008168
Gramene:AT4G28830.1hmmpanther:PTHR23290HOGENOM:HOG000222792IntAct:Q84TF1InterPro:IPR002052InterPro:IPR007848InterPro:IPR029063
ncoils:CoilOMA:QNPPFGIPfam:PF05175PhylomeDB:Q84TF1PROSITE:PS00092Proteomes:UP000006548RefSeq:NP_194612.2
scanprosite:PS00092SMR:Q84TF1STRING:3702.AT4G28830.1SUPFAM:SSF53335TAIR:AT4G28830UniGene:At.31983UniProt:Q84TF1
Coordinates (TAIR10) chr4:+:14232490..14233917
Molecular Weight (calculated) 23193.80 Da
IEP (calculated) 5.00
GRAVY (calculated) -0.19
Length 208 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLKQLEGLL GDLEQFSNPK VEFEQYPTGP HIASRMLFTA ENSYGDITDK VVADFGCGCG TLSAAAALLD AASVIGFDID PESLETATLN AEELEVEIDF
101: VQCDITKLEL KGLIVDTVVM NPPFGTRKKG ADMEFLSAAM KVASKAVYSL HKTSTREHIK RAALRDFNAK SAEVICELRY DLPKLYKFHK RKEVDIAVDL
201: WRFEPRQN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)