suba logo
AT4G28780.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28003327 (2017): extracellular region apoplast
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: Li-tolerant lipase 1 (TAIR:AT3G04290.1); Has 3338 Blast hits to 3300 proteins in 166 species: Archae - 0; Bacteria - 226; Metazoa - 0; Fungi - 7; Plants - 3087; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G28780-MONOMERBioGrid:14286EC:3.1.1.-eggNOG:COG3240eggNOG:ENOG410IKMVEMBL:AL035353EMBL:AL161573
EMBL:AY087166EMBL:BT002993EMBL:BT004465EMBL:CP002687EnsemblPlants:AT4G28780EnsemblPlants:AT4G28780.1entrez:828999
Gene3D:3.40.50.1110GeneID:828999Genevisible:Q9SVU5GO:GO:0005576GO:GO:0016042GO:GO:0016788Gramene:AT4G28780.1
hmmpanther:PTHR22835hmmpanther:PTHR22835:SF160HOGENOM:HOG000237649InParanoid:Q9SVU5IntAct:Q9SVU5InterPro:IPR001087InterPro:IPR013830
KEGG:ath:AT4G28780OMA:ECAPEAQPaxDb:Q9SVU5Pfam:PF00657Pfam:Q9SVU5PhylomeDB:Q9SVU5PIR:T04521
PRIDE:Q9SVU5PRO:PR:Q9SVU5ProteinModelPortal:Q9SVU5Proteomes:UP000006548RefSeq:NP_194607.1STRING:3702.AT4G28780.1SUPFAM:SSF52266
TAIR:AT4G28780TMHMM:TMhelixUniGene:At.2527UniProt:Q9SVU5
Coordinates (TAIR10) chr4:+:14215603..14217159
Molecular Weight (calculated) 39898.90 Da
IEP (calculated) 4.63
GRAVY (calculated) 0.08
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTFLLTWII MTVALSVTLF LMPQQTNAAR AFFVFGDSLV DSGNNNYLVT TARADSPPYG IDYPTGRPTG RFSNGLNLPD IISEQIGSEP TLPILSPELT
101: GEKLLIGANF ASAGIGILND TGVQFLNILR IGRQFELFQE YQERVSEIIG SDKTQQLVNG ALVLMTLGGN DFVNNYFFPI STRRRQSSLG EFSQLLISEY
201: KKILTSLYEL GARRVMVTGT GPLGCVPAEL ASSGSVNGEC APEAQQAAAI FNPLLVQMLQ GLNREIGSDV FIGANAFNTN ADFINNPQRF GFVTSKVACC
301: GQGAYNGQGV CTPLSTLCSD RNAYAFWDPF HPTEKATRLI VQQIMTGSVE YMNPMNLSTI MALDSRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)