AT4G28770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetraspanin family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetraspanin family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: Tetraspanin family protein (TAIR:AT2G20230.1); Has 163 Blast hits to 163 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 162; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:14212177..14213518 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30978.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.65 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.30 | ||||||||||||||||||||||||||||||||||||
| Length | 281 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRHNCCHVSF ASILKILNFL QAFIGISIII YSIWMLDQYN HHVPVDPPPS QPPAASSPDS SYSFSNSIIE INSVSDSLKN PIDFVSGIVL GSGGGDSGFN 101: LRSLDLPAPW FIYCFMAIGI LVCIVTIIGF IAAEAINGCC LCFYSILKTL LIIIEAALVG FIVIDRHWEK DLPYDPTGEL NSLRAFIEEN IDICKWVGIV 201: VVAIQLLSLL LALVLRAMVS PRQSELDDED DFENPMSRAR DNLLGPQANQ TSSGSSNIDN WRSRIREKYG LINSQSHTPS A |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)