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AT4G28760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF3741)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3741); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT2G20240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410INPPeggNOG:ENOG410YC9KEMBL:AY051010EMBL:AY113849EMBL:CP002687EnsemblPlants:AT4G28760EnsemblPlants:AT4G28760.1
EnsemblPlants:AT4G28760.2entrez:828997GeneID:828997Gramene:AT4G28760.1Gramene:AT4G28760.2hmmpanther:PTHR21726hmmpanther:PTHR21726:SF36
IntAct:Q949M4InterPro:IPR022212InterPro:IPR025486InterPro:IPR032795KEGG:ath:AT4G28760OMA:MSKEVEHPfam:PF12552
Pfam:PF14309Pfam:PF14383PhylomeDB:Q949M4Proteomes:UP000006548RefSeq:NP_567819.1RefSeq:NP_974633.1STRING:3702.AT4G28760.1
TAIR:AT4G28760UniGene:At.2528UniGene:At.66645UniProt:Q949M4
Coordinates (TAIR10) chr4:+:14208640..14211811
Molecular Weight (calculated) 102909.00 Da
IEP (calculated) 6.49
GRAVY (calculated) -0.70
Length 924 amino acids
Sequence (TAIR10)
(BLAST)
001: MNELRGRKAQ KIESPVPGCL GKMVNLFDLG IAVNGNKLLT DKPHLDGSSL SRSRSDVTRM PGPSYKGHSE AELIMSDLRR SASSKLSGTP MKKLIAREMS
101: KEVEHKQSPT NVVAKLMGLE TLPQTHQETA TQRSKSRSNS HSSLNHSMTS TDNEVQKYQD FSREFKDVYE TWQSPQKVSR SRDCSPRKGR YDESTTEKQM
201: ALVRQKFSEA KRLVTDDSLH QSKEFQDALE VLSSNKDLFV QFLQESNSFS QQNLSDFHHV PPHSEAKRIT VLRPSKAGET EKYVVQGRRN KQVKKLASSS
301: QETGWGNRDL GYPSPYVNRG TEEHTVQPTR IVVLKPSLGK SLDIKAVSSS QSSPRGLHSR GYFDEPEDVE TKEVAKEITR QVRENLMGHH RNETQSSSVL
401: SNGYIGDDSS FNKSDNEDLV GNLSDSEIMS PASRHSWDCP NRFDSLFSPS SFSRASFSPE SSVCREAKKR LSERWALMSV SGRTQPLKHV SRTSSTLGEM
501: LALTETKVTT ESGEGSYEIV PATRVSTSCI TSDLSQVEMA SDSLNILARS KSVSDVRLNG ETSVLGSSKV QAPRELTKTG SLKSSWKVSN LFFFKNNKAS
601: KEKRDASQCS SMSQLAAPSP VTLTGKTSED CVFPIDCLPP VSSEQQSIIL GEEEVTTPKP LATGNTSENQ DQPSPISVLF PPFEEECASI PECSGSTKHW
701: SSQGDEMSLK SNLIDKSPPI GSIARLLSWD DDSCTDNIAK PAMGVHEEED WHLFIEMILT AAGFSSGCIV SHDPIMSRWH MPNSPLDPSL RDKYTNPDNN
801: NIKEFIHEGK RRQQRSTRKL IFDRINSIVS ETTTTRTGNG SLHFDLVEHV WAQLKDWVSD EPSKRDSGED MDANSLAAES LVKDEIVGRT WTHSLQVEID
901: DFGIEIEKRL LQELVEEAVI DLTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)