suba logo
AT4G28740.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH3JeggNOG:ENOG4111AI9EMBL:CP002687EnsemblPlants:AT4G28740EnsemblPlants:AT4G28740.1entrez:828995GeneID:828995
GO:GO:0009507GO:GO:0009658GO:GO:0016021Gramene:AT4G28740.1InParanoid:F4JM22InterPro:IPR021883iPTMnet:F4JM22
KEGG:ath:AT4G28740OMA:WNAFVAQPaxDb:F4JM22Pfam:PF11998PRIDE:F4JM22Proteomes:UP000006548RefSeq:NP_567817.1
STRING:3702.AT4G28740.1TAIR:AT4G28740TMHMM:TMhelixUniGene:At.2529UniProt:F4JM22
Coordinates (TAIR10) chr4:+:14201051..14202542
Molecular Weight (calculated) 38889.60 Da
IEP (calculated) 9.43
GRAVY (calculated) -0.28
Length 347 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSETGEVA ENLARPMATL VSSQTYIYHC HISKQALYQA KESYSHRRIS RHNHRERLDF SHRNHRLTIT RKQQPLSFNT VCFAADEPSE ISADARIRSE
101: VLSPFRSVRM FFYLAFIASG SLGGLIATSR LIGALANPAR SGEVLEIVKG LGVDIGAASL FAFLYFNENK TKNAQMARLS REENLGKLKM RVEENNKVIS
201: VGDLRGVARL VICAGPAEFI EEAFKRSKEY TQGLVERGVV VVAYATDGNS PVLEFDETDI ADEEMSQRRK KLWRVTPVFV PEWEKWLNEQ KKLANVSSDS
301: PVYLSLRLDG RVRASGVGYP PWQAFVAQLP PVKGMWTGLL DGMDGRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)