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AT4G28706.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : pfkB-like carbohydrate kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT5G43910.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111F4QeggNOG:KOG2947EMBL:AF428378EMBL:AY125545EMBL:CP002687EnsemblPlants:AT4G28706EnsemblPlants:AT4G28706.1
entrez:828990ExpressionAtlas:Q944J2Gene3D:3.40.1190.20GeneID:828990GO:GO:0004747GO:GO:0006014Gramene:AT4G28706.1
hmmpanther:PTHR10584hmmpanther:PTHR10584:SF190HOGENOM:HOG000006181IntAct:Q944J2InterPro:IPR002139InterPro:IPR002173InterPro:IPR011611
InterPro:IPR029056Pfam:PF00294PhylomeDB:Q944J2PRINTS:PR00990PROSITE:PS00584Proteomes:UP000006548RefSeq:NP_567816.1
scanprosite:PS00584SMR:Q944J2STRING:3702.AT4G28706.4SUPFAM:SSF53613TAIR:AT4G28706UniGene:At.26257UniProt:Q944J2
Coordinates (TAIR10) chr4:+:14167805..14170619
Molecular Weight (calculated) 43082.00 Da
IEP (calculated) 6.26
GRAVY (calculated) -0.00
Length 401 amino acids
Sequence (TAIR10)
(BLAST)
001: MLCFTHVPPL PLFSTSGIYL PASRRFTRIR MSSSSSIDSV PPPPDNAIVL GCGGIAVDFL ATVDSYPQAD DKIRSTSLKV QGGGNAANAL TCAARLGLNS
101: RLISKVANDS QGKGMLEELE ADGVDTSFIV VSKEGNSPFT YILVDNQTKT RTCIHTPGDP PMLPTDLSQS SMLSALDRAS IVYFDVRLHE TALVIAKEAS
201: RKKIPILVDT EKKRDGLDDL LPFADYVVCP ENFPQTWTEV SSTPGALVSM LLRLPKLKFV IVTSGEHGCL MVQRASKEVF ESQETDIESL LETLKHRKDS
301: TTTFPTCVSS ETTKLKANGV GTMTGRLFLG TAEKIPPEEL VDTTGAGDAF IGAVLYAICA GMPPEKMLPF AAQVAGCSCR ALGARTGLPH RTDPRLVPFL
401: V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)