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AT4G28590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G31840.1); Has 114 Blast hits to 112 proteins in 39 species: Archae - 2; Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 67; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHNDeggNOG:ENOG410YAAYEMBL:CP002687EnsemblPlants:AT4G28590EnsemblPlants:AT4G28590.1entrez:828977GeneID:828977
GO:GO:0006355GO:GO:0009658GO:GO:0042644Gramene:AT4G28590.1hmmpanther:PTHR34669hmmpanther:PTHR34669:SF2InParanoid:F4JLC1
InterPro:IPR012336KEGG:ath:AT4G28590OMA:NWKTLKEPaxDb:F4JLC1PRIDE:F4JLC1ProteinModelPortal:F4JLC1Proteomes:UP000006548
RefSeq:NP_194588.2STRING:3702.AT4G28590.1SUPFAM:SSF52833TAIR:AT4G28590UniGene:At.50374UniProt:F4JLC1
Coordinates (TAIR10) chr4:-:14125367..14126828
Molecular Weight (calculated) 38242.80 Da
IEP (calculated) 4.99
GRAVY (calculated) -0.68
Length 331 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFFAVACSA PRSSMLLTGL NSSFSDMHRS PLFVFPVTIS SRSVKRFAAV SSDSVLDPES KNQTRSRRKN KEAVTPIAET ENNEKFPTKV PRKSKRGRRS
101: EADAVEDYVR SSLERTFSTI KEQNPEVFEN KEKANFIKDR GVDEEEEEEE EMVVEEEDPD WPVDTDVGWG IKASEYFDTH PIKNVVGDDG SEIDWEGEID
201: DSWVKEINCL EWESFAFHPS PLVVLVFERY KRASDNWKTL KELEKAIKVY WDAKDRLPPR AVKIDLNIET DLAYALKAKE CPQILFLRGN RILYREKDFR
301: TADELVHMIA HFYYKAKRPS CVDKANVTPY C
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)