AT4G28550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: sperm cell, root, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G20440.2); Has 4375 Blast hits to 4233 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 2348; Fungi - 794; Plants - 640; Viruses - 0; Other Eukaryotes - 593 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14111204..14113468 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49117.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.50 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||
| Length | 424 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MICCGFMWKS GGEDLQGFYP VREECVADVP RTRFKSRAGK TLSARKWHAA FTGDGHLDME RVLRRIQRGG IHPSIKGEVW EFLLGAYDPD STFEERNKLR 101: NHRREQYYAW KEECKNMVPL VGSGKFVTMA VVAEDGQPLE ESSVDNQEWV VKTAITDKRV LQWMLVLSQI GLDVVRTDRY LCFYESESNQ ARLWDILSIY 201: TWLNPDIGYV QGMNDICSPM IILLEDEADA FWCFERAMRR LRENFRTTAT SMGVQTQLGM LSQVIKTVDP RLHQHLEDLD GGEYLFAIRM LMVLFRREFS 301: FLDALYLWEL MWAMEYNPNK FASYEEPQNM NNSSGQDPRL LKQYGKFERK YIKSGQNEQH NTLAVFVVAS VLETKNKRLL KEAKGLDDVV QILGGIAGNL 401: DARKACKEAL KIHEKFLKKA NSKH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)