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AT4G28550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: sperm cell, root, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G20440.2); Has 4375 Blast hits to 4233 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 2348; Fungi - 794; Plants - 640; Viruses - 0; Other Eukaryotes - 593 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5210eggNOG:KOG2197EMBL:BT029738EMBL:CP002687EnsemblPlants:AT4G28550EnsemblPlants:AT4G28550.1entrez:828973
GeneID:828973Gramene:AT4G28550.1hmmpanther:PTHR22957hmmpanther:PTHR22957:SF299HOGENOM:HOG000220917InterPro:IPR000195KEGG:ath:AT4G28550
OMA:AGMIKRVPfam:PF00566Pfscan:PS50086PhylomeDB:A1L4V1PROSITE:PS50086Proteomes:UP000006548RefSeq:NP_194584.3
SMART:SM00164SMR:A1L4V1STRING:3702.AT4G28550.1SUPFAM:SSF47923TAIR:AT4G28550UniGene:At.43461UniProt:A1L4V1
Coordinates (TAIR10) chr4:+:14111204..14113468
Molecular Weight (calculated) 49117.10 Da
IEP (calculated) 7.50
GRAVY (calculated) -0.42
Length 424 amino acids
Sequence (TAIR10)
(BLAST)
001: MICCGFMWKS GGEDLQGFYP VREECVADVP RTRFKSRAGK TLSARKWHAA FTGDGHLDME RVLRRIQRGG IHPSIKGEVW EFLLGAYDPD STFEERNKLR
101: NHRREQYYAW KEECKNMVPL VGSGKFVTMA VVAEDGQPLE ESSVDNQEWV VKTAITDKRV LQWMLVLSQI GLDVVRTDRY LCFYESESNQ ARLWDILSIY
201: TWLNPDIGYV QGMNDICSPM IILLEDEADA FWCFERAMRR LRENFRTTAT SMGVQTQLGM LSQVIKTVDP RLHQHLEDLD GGEYLFAIRM LMVLFRREFS
301: FLDALYLWEL MWAMEYNPNK FASYEEPQNM NNSSGQDPRL LKQYGKFERK YIKSGQNEQH NTLAVFVVAS VLETKNKRLL KEAKGLDDVV QILGGIAGNL
401: DARKACKEAL KIHEKFLKKA NSKH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)