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AT4G28440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.715
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nucleic acid-binding, OB-fold-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleic acid-binding, OB-fold-like protein; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT2G33845.1); Has 214 Blast hits to 214 proteins in 47 species: Archae - 22; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
BioGrid:14248eggNOG:ENOG410IX7ZeggNOG:ENOG4111IKTEMBL:AL021749EMBL:AL161572EMBL:AY050905EMBL:AY056432
EMBL:AY088082EMBL:AY091407EMBL:CP002687EnsemblPlants:AT4G28440EnsemblPlants:AT4G28440.1entrez:828961EvolutionaryTrace:O49453
Gene3D:2.40.50.140GeneID:828961Genevisible:O49453GO:GO:0005829Gramene:AT4G28440.1hmmpanther:PTHR31472HOGENOM:HOG000237696
InParanoid:O49453IntAct:O49453InterPro:IPR012340KEGG:ath:AT4G28440KO:K07466OMA:CIAECLIPaxDb:O49453
PDB:1WJJPDBsum:1WJJPfam:O49453PhylomeDB:O49453PIR:T04614PRIDE:O49453PRO:PR:O49453
ProteinModelPortal:O49453Proteomes:UP000006548RefSeq:NP_194573.1SMR:O49453STRING:3702.AT4G28440.1SUPFAM:SSF50249TAIR:AT4G28440
UniGene:At.23199UniProt:O49453
Coordinates (TAIR10) chr4:+:14060054..14060970
Molecular Weight (calculated) 16460.00 Da
IEP (calculated) 10.07
GRAVY (calculated) -0.10
Length 153 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTGTAAVA TGTSTVKRKP VFVKVEQLKP GTTGHTLTVK VIEANIVVPV TRKTRPASSL SRPSQPSRIV ECLIGDETGC ILFTARNDQV DLMKPGATVI
101: LRNSRIDMFK GTMRLGVDKW GRIEATGAAS FTVKEDNNLS LVEYELINVG GDQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)