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AT4G28310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0U5eggNOG:ENOG410YTTIEMBL:AK176906EMBL:AY085776EMBL:BT025644EMBL:CP002687EnsemblPlants:AT4G28310
EnsemblPlants:AT4G28310.1entrez:828946GeneID:828946Gramene:AT4G28310.1hmmpanther:PTHR35103HOGENOM:HOG000077580KEGG:ath:AT4G28310
OMA:ALGPGKFPhylomeDB:Q8LDV4Proteomes:UP000006548RefSeq:NP_567804.1STRING:3702.AT4G28310.1TAIR:AT4G28310UniGene:At.48910
UniGene:At.71248UniProt:Q8LDV4
Coordinates (TAIR10) chr4:+:14017458..14018066
Molecular Weight (calculated) 23081.80 Da
IEP (calculated) 11.00
GRAVY (calculated) -0.88
Length 202 amino acids
Sequence (TAIR10)
(BLAST)
001: MMTPVKKSIA IRPVSFYGNG LPRPRFFDNP KFNDYRVDPP LSVLDPLLSW ARDAHWSMGG LNFTRLRLQG RIEGNVNKLR AQLEKSTPVK LESGRKKKRS
101: GSESPPSAPI VVKRRRYLDL NDSDDEEVGS EDEGVVRIRR KLSDDFDRVA EESKTKLVEA NKKSIKSEFV EKKRLIEKKK IVKVNKTSST RSSPRLAKRS
201: SN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)