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AT4G28300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF1421)
Curator
Summary (TAIR10)
Encodes a protein with 13.6% proline amino acids that is predicted to localize to the cell wall.
Computational
Description (TAIR10)
Protein of unknown function (DUF1421); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1421 (InterPro:IPR010820); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1421) (TAIR:AT5G14540.1); Has 69579 Blast hits to 42038 proteins in 1735 species: Archae - 58; Bacteria - 7637; Metazoa - 28439; Fungi - 15188; Plants - 8838; Viruses - 1343; Other Eukaryotes - 8076 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKKGeggNOG:ENOG410YI4WEMBL:AY063895EMBL:AY096387EMBL:CP002687EnsemblPlants:AT4G28300EnsemblPlants:AT4G28300.1
entrez:828945ExpressionAtlas:Q8VZR8GeneID:828945Gramene:AT4G28300.1hmmpanther:PTHR31805hmmpanther:PTHR31805:SF3IntAct:Q8VZR8
InterPro:IPR010820KEGG:ath:AT4G28300ncoils:CoilOMA:DMICTIEPfam:PF07223PhylomeDB:Q8VZR8Proteomes:UP000006548
RefSeq:NP_194559.2STRING:3702.AT4G28300.1TAIR:AT4G28300UniGene:At.24043UniGene:At.67641UniProt:Q8VZR8
Coordinates (TAIR10) chr4:+:14014860..14016823
Molecular Weight (calculated) 54109.70 Da
IEP (calculated) 6.23
GRAVY (calculated) -0.94
Length 496 amino acids
Sequence (TAIR10)
(BLAST)
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)