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AT4G28250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : expansin B3
Curator
Summary (TAIR10)
putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational
Description (TAIR10)
expansin B3 (EXPB3); INVOLVED IN: response to cyclopentenone, syncytium formation, plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin B1 (TAIR:AT2G20750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:14227eggNOG:ENOG410IFMZeggNOG:ENOG410YA5QEMBL:AL161572EMBL:AY039986EMBL:AY133801EMBL:CP002687
EnsemblPlants:AT4G28250EnsemblPlants:AT4G28250.1entrez:828940ExpressionAtlas:Q9M0I2Gene3D:2.40.40.10Gene3D:2.60.40.760GeneID:828940
Genevisible:Q9M0I2GO:GO:0005576GO:GO:0005618GO:GO:0006949GO:GO:0009506GO:GO:0016020GO:GO:0019953
GO:GO:0071555hmmpanther:PTHR31692hmmpanther:PTHR31692:SF5HOGENOM:HOG000220794InParanoid:Q9M0I2IntAct:Q9M0I2InterPro:IPR005795
InterPro:IPR007112InterPro:IPR007117InterPro:IPR007118InterPro:IPR009009OMA:RNWAPKAPaxDb:Q9M0I2Pfam:PF01357
Pfam:PF03330Pfam:Q9M0I2Pfscan:PS50842Pfscan:PS50843PhylomeDB:Q9M0I2PRIDE:Q9M0I2PRINTS:PR00829
PRINTS:PR01225PRO:PR:Q9M0I2PROSITE:PS50842PROSITE:PS50843ProteinModelPortal:Q9M0I2Proteomes:UP000006548RefSeq:NP_567803.1
SMART:SM00837SMR:Q9M0I2STRING:3702.AT4G28250.1SUPFAM:SSF49590SUPFAM:SSF50685TAIR:AT4G28250tair10-symbols:ATEXPB3
tair10-symbols:ATHEXP BETA 1.6tair10-symbols:EXPB3UniGene:At.23110UniProt:Q9M0I2
Coordinates (TAIR10) chr4:-:14000446..14001945
Molecular Weight (calculated) 28426.40 Da
IEP (calculated) 8.85
GRAVY (calculated) 0.06
Length 264 amino acids
Sequence (TAIR10)
(BLAST)
001: MQLFPVMLAT LCIVLQLLIG SSALATTNRH VSNSHWLPAV ATWYGSPNGD GSDGGACGYG TLVDVKPLHA RVGAVNPILF KNGEGCGACY KVRCLDKSIC
101: SRRAVTVIIT DECPGCSKTS THFDLSGAVF GRLAIAGESG PLRNRGLIPV IYRRTACKYR GKNIAFHVNE GSTDFWLSLL VEFEDGEGDI GSMHIRQAGA
201: REWLEMKHVW GANWCIIGGP LKGPFSIKLT TLSAGKTLSA TDVVPRNWAP KATYSSRLNF SPVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)