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AT4G28230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.985
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 444 Blast hits to 358 proteins in 107 species: Archae - 0; Bacteria - 20; Metazoa - 179; Fungi - 26; Plants - 38; Viruses - 2; Other Eukaryotes - 179 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGK6eggNOG:ENOG410YPUTEMBL:AK228240EMBL:AL161572EMBL:BT006466EMBL:CP002687EnsemblPlants:AT4G28230
EnsemblPlants:AT4G28230.1entrez:828938GeneID:828938Gramene:AT4G28230.1hmmpanther:PTHR36386HOGENOM:HOG000090998IntAct:Q9M0I4
KEGG:ath:AT4G28230ncoils:CoilOMA:RRKSCFFPhylomeDB:Q9M0I4PIR:T09039Proteomes:UP000006548RefSeq:NP_194552.1
STRING:3702.AT4G28230.1TAIR:AT4G28230UniGene:At.4519UniGene:At.69904UniGene:At.71073UniProt:Q9M0I4
Coordinates (TAIR10) chr4:-:13995990..13997198
Molecular Weight (calculated) 44717.80 Da
IEP (calculated) 10.51
GRAVY (calculated) -0.90
Length 402 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSIEATETL NAPPKLQIWN NAAFDDGDSQ ITSAIEASSW SHLNESFDSD CSKENQFPIS VSSSLQSSVS ITEAPSAKSK TVKTKSAADR SKKRDIDAEI
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)