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AT4G28210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:20061580 (2010): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : embryo defective 1923
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1923 (emb1923); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKXUeggNOG:ENOG41125Z2EMBL:AK226695EMBL:AL161572EMBL:BT025236EMBL:CP002687EnsemblPlants:AT4G28210
EnsemblPlants:AT4G28210.1entrez:828936GeneID:828936GO:GO:0016021Gramene:AT4G28210.1KEGG:ath:AT4G28210OMA:FCRNSRI
PhylomeDB:Q9M0I6PIR:T09037Proteomes:UP000006548RefSeq:NP_567800.1STRING:3702.AT4G28210.1TAIR:AT4G28210tair10-symbols:emb1923
TMHMM:TMhelixUniGene:At.32035UniProt:Q9M0I6
Coordinates (TAIR10) chr4:+:13990634..13991931
Molecular Weight (calculated) 38341.70 Da
IEP (calculated) 10.14
GRAVY (calculated) 0.30
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLLALSSSL SSPSFFCRNS RIRFSPVSRI SSLNGDNKLT NSPPQFLNAG ASLRRFVAPG KFPSVRLRVL TRCEKENAPK GGIEDDAERF ARRESTMPDR
101: FRYLTKEAPD SPIIWPWFVA LGFLVYAWRA VLFELSNWRK AAFAILAFVG DLSKFALALV FHFIGDPITS LISLVETAMY SVRAFYSGIV AYTPVRELTT
201: VILLASSVLA IGEAVAPESI SKQPYVVTIA GLVGYAAVQS YISEPFFWTV LLGLYGYSRL IKKRDDVTSA LPSAAVLAGV GEPWVRVVAI TGYLALAMYH
301: NSTKTSSEEE SQILRRAPPM PLLAAALAIG VRLAAKWAGY RHLTWMIV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)