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AT4G28200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 492 Blast hits to 480 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
Protein Annotations
DNASU:828935eggNOG:COG5191eggNOG:KOG2396EMBL:AL161572EMBL:AY072310EMBL:BT008394EMBL:CP002687
EnsemblPlants:AT4G28200EnsemblPlants:AT4G28200.1entrez:828935Gene3D:1.25.40.10GeneID:828935GO:GO:0006396Gramene:AT4G28200.1
hmmpanther:PTHR23271HOGENOM:HOG000029932IntAct:Q9M0I7InterPro:IPR003107InterPro:IPR011990InterPro:IPR013949KEGG:ath:AT4G28200
KO:K14557ncoils:CoilOMA:LLWHEYFPfam:PF08640PhylomeDB:Q9M0I7PIR:T09036Proteomes:UP000006548
RefSeq:NP_194549.1SMART:SM00386SMR:Q9M0I7STRING:3702.AT4G28200.1SUPFAM:SSF48452TAIR:AT4G28200UniGene:At.43066
UniProt:Q9M0I7
Coordinates (TAIR10) chr4:-:13987808..13990422
Molecular Weight (calculated) 74667.00 Da
IEP (calculated) 5.81
GRAVY (calculated) -0.41
Length 648 amino acids
Sequence (TAIR10)
(BLAST)
001: MADVVQYRLE RMVDELDDLE RREIFTRAEI AEIVKQRRKF EYRLKRPSPL KEDFIAYIDY EVKLDELRQL RRKSVARVTK KRKKKSVSDF AGVARIVEIY
101: RLATMRYKGD INLWFRYLEF CKQKRHGRMK KALAQAIRFH PKVAGVWIYA ASWEFDRNLN VTAARALMLN GLRVCSNSED LWVEYLRMEL TFLNKLKARK
201: VALGEDKGSL VRDTKTVEDE QWKDENKELF MSLDEKEGNE KEENDEDSIV EDVEDVTEKV DFLKEKGSNV LQTIYSGAVE AIPSSFDLRK RFLEILEATD
301: LAHSDEMRNT ILSDLKRDFC NEPEYWNWLA RHEMSGCISN EAGLEFANPQ MQKAIQVFEE GLQTVTSSSM FEIYINFLME AIVQSNGDEN EISSLSNPII
401: SHIINVYQKA DETGCLTEEL ADEYVSLYLK LEKTHEAQKL AEKLCSEKFA GSAKLWLSRV SIEIRSLSEN SSPSKADFQT VFELLSNALR KVPISESESL
501: WLMAFNFFAH QRTYLDKLVE MSILSATKSH GSDHVFSLAS TVVKFVLETK GAHSARKIYK RFLALPGPSL VLYKGCIEIE TNLISVGDKD GLSNARKLYD
601: SAVASYGQDV ELWKNYYSLE TKLGTSETAN GVYWRARKTL NESADFIV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)