AT4G28200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 492 Blast hits to 480 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:13987808..13990422 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74667.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.81 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||
| Length | 648 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADVVQYRLE RMVDELDDLE RREIFTRAEI AEIVKQRRKF EYRLKRPSPL KEDFIAYIDY EVKLDELRQL RRKSVARVTK KRKKKSVSDF AGVARIVEIY 101: RLATMRYKGD INLWFRYLEF CKQKRHGRMK KALAQAIRFH PKVAGVWIYA ASWEFDRNLN VTAARALMLN GLRVCSNSED LWVEYLRMEL TFLNKLKARK 201: VALGEDKGSL VRDTKTVEDE QWKDENKELF MSLDEKEGNE KEENDEDSIV EDVEDVTEKV DFLKEKGSNV LQTIYSGAVE AIPSSFDLRK RFLEILEATD 301: LAHSDEMRNT ILSDLKRDFC NEPEYWNWLA RHEMSGCISN EAGLEFANPQ MQKAIQVFEE GLQTVTSSSM FEIYINFLME AIVQSNGDEN EISSLSNPII 401: SHIINVYQKA DETGCLTEEL ADEYVSLYLK LEKTHEAQKL AEKLCSEKFA GSAKLWLSRV SIEIRSLSEN SSPSKADFQT VFELLSNALR KVPISESESL 501: WLMAFNFFAH QRTYLDKLVE MSILSATKSH GSDHVFSLAS TVVKFVLETK GAHSARKIYK RFLALPGPSL VLYKGCIEIE TNLISVGDKD GLSNARKLYD 601: SAVASYGQDV ELWKNYYSLE TKLGTSETAN GVYWRARKTL NESADFIV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)