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AT4G28180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.990
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; Has 1508 Blast hits to 1315 proteins in 223 species: Archae - 4; Bacteria - 127; Metazoa - 687; Fungi - 310; Plants - 142; Viruses - 28; Other Eukaryotes - 210 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVM6eggNOG:ENOG41105SVEMBL:AK176823EMBL:AL161572EMBL:BT010411EMBL:CP002687EnsemblPlants:AT4G28180
EnsemblPlants:AT4G28180.1entrez:828933GeneID:828933Gramene:AT4G28180.1hmmpanther:PTHR33871HOGENOM:HOG000210032IntAct:Q9M0I9
KEGG:ath:AT4G28180ncoils:CoilOMA:PEVSMECPIR:T09034Proteomes:UP000006548RefSeq:NP_194547.1STRING:3702.AT4G28180.1
TAIR:AT4G28180UniGene:At.32038UniGene:At.54534UniProt:Q9M0I9
Coordinates (TAIR10) chr4:-:13982911..13983681
Molecular Weight (calculated) 27610.60 Da
IEP (calculated) 9.69
GRAVY (calculated) -0.68
Length 256 amino acids
Sequence (TAIR10)
(BLAST)
001: MGCCFSAGKV TAPPVAAAQI PPPLEEESVK EVVVQSVSVS VPIPISVPVP VPDLVPSAPT VSDSEAQVPL PLSPPAPEIS HSKSDICSVS VSHSYSTATT
101: ATAASILEDD ALSKPHRPPP PSSSTSRRNR PDRVLRSPAE RHSPQGKQLR PRLVRERQSR QPNPTHNRRN VDSGPLPRSG LSDNPRRRSQ SPATRAPSSA
201: RRSPMKKRVG APEKDGATEV KKKEEETEKV TAEVKKEEDV TAVRDPEVSM ECFIFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)