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AT4G28160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: cell wall protein precursor, putative (TAIR:AT2G20870.1); Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUCHeggNOG:ENOG4110708EMBL:AL161572EMBL:BT010660EMBL:BT011582EMBL:CP002687EnsemblPlants:AT4G28160
EnsemblPlants:AT4G28160.1entrez:828931GeneID:828931Gramene:AT4G28160.1hmmpanther:PTHR36733HOGENOM:HOG000294230IntAct:Q9M0J1
KEGG:ath:AT4G28160OMA:TPSESKHPhylomeDB:Q9M0J1PIR:T09032Proteomes:UP000006548RefSeq:NP_194545.1STRING:3702.AT4G28160.1
TAIR:AT4G28160UniGene:At.32040UniProt:Q9M0J1
Coordinates (TAIR10) chr4:+:13980390..13980725
Molecular Weight (calculated) 11813.30 Da
IEP (calculated) 5.76
GRAVY (calculated) -0.10
Length 111 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYTLQNLTA TIVLVSLILG CTEEVTGMRY IPISPTPSES KHSDFPVNMV PQPSSLIPGF GRFLLPPTPK LPFLPYKDPL AVAPATSNGT PSNKARSPSS
101: GEDEVPPVPQ P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)