AT4G28090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.980 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SKU5 similar 10 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SKU5 similar 10 (sks10); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 9 (TAIR:AT4G38420.1); Has 5723 Blast hits to 5680 proteins in 1067 species: Archae - 8; Bacteria - 1783; Metazoa - 293; Fungi - 2175; Plants - 1268; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:13961888..13964229 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62254.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.05 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 547 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEWWLNGGVW MMMMTTTIIS FVKAEDTLFY NWRVTYGKIA LDTLPRRGIL INGQFPGPEI RSLTNDNLVI NVQNDLDDPF LLSWNGVHMR KNSYQDGVYG 101: TNCPIPPGKN YTYDFQVKDQ VGSYFYFPSL AVQKAAGGYG SLRIYSLPRI PVPFPEPAED FTFLVNDWYR RNHTTLKKIL DGGRKLPLMP DGVMINGQGV 201: STVYSITVDK GKTYRFRVSN VGLQTSLNLE ILGHQLKLIE VEGTHTVQTM YTSLDIHVGQ TYSFLVTMDQ PPQNYSIVVS TRFINAEVVI RATLHYSNSK 301: GHKIITARRP DPDDVEWSIK QAQSIRTNLT ASGPRTNPQG SYHYGKMKIS RTLILESSAA LVKRKQRYAI NGVSFVPSDT PLKLADHFKI KDVFKVGTIP 401: DKPRRGGGIR LDTAVMGAHH NAFLEIIFQN REKIVQSYHL DGYNFWVVGI NKGIWSRASR REYNLKDAIS RSTTQVYPKS WTAVYVALDN VGMWNLRSQF 501: WARQYLGQQF YLRVHSPNHS PKDEYPLPKN ALLCGRASNK NMSIITP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)