suba logo
AT4G28080.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.993
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G01320.2); Has 11837 Blast hits to 4947 proteins in 554 species: Archae - 95; Bacteria - 3252; Metazoa - 4987; Fungi - 1783; Plants - 350; Viruses - 14; Other Eukaryotes - 1356 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQUQeggNOG:KOG1839EMBL:AL035524EMBL:AL161572EMBL:CP002687EnsemblPlants:AT4G28080EnsemblPlants:AT4G28080.1
entrez:828923Gene3D:1.25.40.10GeneID:828923Genevisible:F4JKH6GO:GO:0007049GO:GO:0007275Gramene:AT4G28080.1
hmmpanther:PTHR12601hmmpanther:PTHR12601:SF9InParanoid:F4JKH6InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734InterPro:IPR028275
iPTMnet:F4JKH6KEGG:ath:AT4G28080KO:K03255ncoils:CoilOMA:CTEQINKPaxDb:F4JKH6Pfam:PF12807
Pfam:PF13424Pfam:PF15044Pfscan:PS50005Pfscan:PS50293PIR:T02909PRIDE:F4JKH6PRO:PR:F4JKH6
PROSITE:PS50005PROSITE:PS50293ProteinModelPortal:F4JKH6Proteomes:UP000006548RefSeq:NP_194537.7SMART:SM00028STRING:3702.AT4G28080.1
SUPFAM:SSF48452TAIR:AT4G28080UniGene:At.24978UniGene:At.69900UniGene:At.73208UniGene:At.75409UniGene:At.75417
UniProt:F4JKH6
Coordinates (TAIR10) chr4:-:13948993..13957840
Molecular Weight (calculated) 199126.00 Da
IEP (calculated) 6.07
GRAVY (calculated) -0.60
Length 1819 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAPKAGKTKP HKSKGEKKKK EEKVLPTVIE ISVETPDESQ VTLKGISTDR ILDVRKLLAV HVQTCHFTNF SLSHQVRGTK LKDSVDIVSL KPCHLTIVEE
0101: DYTEEQATAH IRRLLDIVAC TTAFGPSKPP VSRTLPKDSE KKESGSTDGD SPTEKDAGDS NSGLSPKPKE SEKKSVGACE AQSAEGAAKS DIDMCPPTRL
0201: GQFYEFFSFS YLTPPIQYIR RSVRPSKEDK GLDDLFQIDI KVSSGKPFTV VASRTGFYPP GKQQLLCHSL VELLQQISRP FDAAYDALMK AFIEHNKFGN
0301: LPYGFRANTW VVPPVVADSP STFPSLPVED ETWGGDGGGV GRSGKYDKRK WAKEFAILAA MPCKTPEERQ VRDRKAFLLH SLFVDVSVFK AVEIIKKIVE
0401: NNQCSLKDPA ALGFHEERIG DLIVRVARDD PDASAKLDRK SDGTQVLEIS QEELAQRNLL KGITADESAT VHDTSTLGVV VVRHCGCTAI VKVASEFKLN
0501: DGHILQDIDI EDQSEGGANA LNVNSLRTLL HKSSTPSSLA QRSPNADSEQ IRVAKSLVRK VIEDSLKKLE IEPSRYSKPI RWELGACWVQ HLQNQASSKS
0601: ESKKTEDPKP EPAVKGLGKQ GALLKEIKRK IDVKANKTEQ GKEAPANDTD NTSETEDQKE LEKQNEEIEK MWKELVTETA YQRLKESETG FHLKSPKELI
0701: EMARKYYTDT ALPKLVADFG SLELSPVDGR TLTDFMHTRG LQMHSLGRVV ELAEKLPHVQ SLCVHEMIVR AYKHILQAVV AAVENTADVA TSIATCLNVL
0801: LGTPSDTESV YDEKIKWTWV ETFISKRFGW DWKHEGCQEL RKFSILRGLS HKVGLELVPK DYEMDTSYPF KKFDIISMVP VYKHVACSSA DGRTLLESSK
0901: TSLDKGKLED AVNYGTKALA KLVAVCGPYH RMTAGAYSLL AVVLYHTGDF NQATIYQQKA LDINERELGL DHPDTMKSYG DLAVFYYRLQ HTELALKYVN
1001: RALYLLHLTC GPSHPNTAAT YINVAMMEEG MKNAHVALRY LHEALKCNQR LLGADHIQTA ASYHAIAIAL SLMDAYSLSV QHEQTTLQIL QAKLGPEDLR
1101: TQDAAAWLEY FESKALEQQE AARNGTPKPD ASISSKGHLS VSDLLDYITP DSGIKARDAQ RKARPKVKGK PGQSPGPVSE ENQKDDEILS PAHLTGESSS
1201: DKENKSETKS EEKKVENFDL EQSKPQDQLK LVKPEATVHE DDDSDEGWQE AVPKNRFSSG RRTRPSLAKL NTNFMNVTQQ PSRSRGKSTN FTSPRTSSNE
1301: LSISVAGSTS SPASKMFVKS PLNKKQNNSS VVGERPVNDK SALASSACTE QINKPTPMLS PVSVKAGKLF SYKEVALAPP GTIVKIVAEQ LPEETKAPQN
1401: LDAAKIAVDG PEKVNAQDAE SENKHVATET EAENTDCNEQ GRVVVGGSEL TSSPKEIKNV EVEKAAEKAF PIETAVSNAR PGKSKSAQMA EDSDTCLLNK
1501: SPTANDSNGS ESVIGVKLQK DLCDAELKTV DGETENLPNG DSSPKSSVAA DGEKQDACEA QKEMSKKLSA SAPPYTPTTI PIFGSIAVPG FKDHGGILPS
1601: PLNMPPMLPI NHVRRSTPHQ SVTARVPYGP RLSGGGYNRS GNRVPRNKPS FPNSTESNGE ANQFNGPRIM NPHAAEFIPS QPWVSNGYPV SPNGYLASPN
1701: GAEITQNGYP LSPVAGGYPC NMSVTQPQDG LVSEELPGAG SSEEKSGSEE ESNNDKNAGE DDEAVGQETT DTPENGHSTV GEVETTSHET CDEKNGERQG
1801: GKCWGDYSDN EIEQIEVTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)