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AT4G28010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.542
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: rna processing factor 2 (TAIR:AT1G62670.1); Has 64686 Blast hits to 15009 proteins in 313 species: Archae - 9; Bacteria - 69; Metazoa - 819; Fungi - 1094; Plants - 60516; Viruses - 0; Other Eukaryotes - 2179 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL035524EMBL:AL161572EMBL:AY128275EMBL:CP002687EnsemblPlants:AT4G28010
EnsemblPlants:AT4G28010.1entrez:828915Gene3D:1.25.40.10GeneID:828915Genevisible:Q9SUD8Gramene:AT4G28010.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF372HOGENOM:HOG000115639InParanoid:Q9SUD8InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT4G28010OMA:DSPCAIT
PaxDb:Q9SUD8Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:Q9SUD8Pfscan:PS51375PhylomeDB:Q9SUD8
PIR:T02902PRIDE:Q9SUD8PRO:PR:Q9SUD8PROSITE:PS51375ProteinModelPortal:Q9SUD8Proteomes:UP000006548RefSeq:NP_194530.1
SMR:Q9SUD8STRING:3702.AT4G28010.1SUPFAM:SSF81901TAIR:AT4G28010TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.32055
UniProt:Q9SUD8
Coordinates (TAIR10) chr4:+:13930379..13932493
Molecular Weight (calculated) 79114.20 Da
IEP (calculated) 5.71
GRAVY (calculated) -0.08
Length 704 amino acids
Sequence (TAIR10)
(BLAST)
001: MRFWTSAAAA EILRRDEHVV RKLLNPRVYS KLVNAFSETE TKLRSLCEDS NPQLKNAVSV FQQAVDSGSS LAFAGNNLMA KLVRSRNHEL AFSFYRKMLE
101: TDTFINFVSL SGLLECYVQM RKTGFAFGVL ALMLKRGFAF NVYNHNILLK GLCRNLECGK AVSLLREMRR NSLMPDVFSY NTVIRGFCEG KELEKALELA
201: NEMKGSGCSW SLVTWGILID AFCKAGKMDE AMGFLKEMKF MGLEADLVVY TSLIRGFCDC GELDRGKALF DEVLERGDSP CAITYNTLIR GFCKLGQLKE
301: ASEIFEFMIE RGVRPNVYTY TGLIDGLCGV GKTKEALQLL NLMIEKDEEP NAVTYNIIIN KLCKDGLVAD AVEIVELMKK RRTRPDNITY NILLGGLCAK
401: GDLDEASKLL YLMLKDSSYT DPDVISYNAL IHGLCKENRL HQALDIYDLL VEKLGAGDRV TTNILLNSTL KAGDVNKAME LWKQISDSKI VRNSDTYTAM
501: IDGFCKTGML NVAKGLLCKM RVSELQPSVF DYNCLLSSLC KEGSLDQAWR LFEEMQRDNN FPDVVSFNIM IDGSLKAGDI KSAESLLVGM SRAGLSPDLF
601: TYSKLINRFL KLGYLDEAIS FFDKMVDSGF EPDAHICDSV LKYCISQGET DKLTELVKKL VDKDIVLDKE LTCTVMDYMC NSSANMDLAK RLLRVTDDKE
701: ERDK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)