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AT4G27940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : manganese tracking factor for mitochondrial SOD2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
manganese tracking factor for mitochondrial SOD2 (MTM1); FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT2G46320.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:14194eggNOG:ENOG410XQVPeggNOG:KOG0761EMBL:AF428433EMBL:AL035524EMBL:AL161572EMBL:AY085360
EMBL:AY125549EMBL:CP002687EnsemblPlants:AT4G27940EnsemblPlants:AT4G27940.1entrez:828907Gene3D:1.50.40.10GeneID:828907
Genevisible:Q944H5GO:GO:0005215GO:GO:0005739GO:GO:0005743GO:GO:0006828GO:GO:0016021GO:GO:0016530
GO:GO:1901562Gramene:AT4G27940.1hmmpanther:PTHR24089hmmpanther:PTHR24089:SF397HOGENOM:HOG000214473InParanoid:Q944H5InterPro:IPR018108
InterPro:IPR023395KEGG:ath:AT4G27940KO:K15119OMA:YLPFYDMPaxDb:Q944H5Pfam:PF00153Pfam:Q944H5
Pfscan:PS50920PhylomeDB:Q944H5PIR:T02895PRIDE:Q944H5PRO:PR:Q944H5PROSITE:PS50920ProteinModelPortal:Q944H5
Proteomes:UP000006548RefSeq:NP_567790.1SMR:Q944H5STRING:3702.AT4G27940.1SUPFAM:0048588SUPFAM:SSF103506TAIR:AT4G27940
tair10-symbols:ATMTM1tair10-symbols:MTM1TMHMM:TMhelixUniGene:At.2658UniProt:Q944H5
Coordinates (TAIR10) chr4:+:13904745..13907036
Molecular Weight (calculated) 44537.00 Da
IEP (calculated) 9.45
GRAVY (calculated) 0.08
Length 413 amino acids
Sequence (TAIR10)
(BLAST)
001: MVEAERAENS WIASETSPSS SPVVIESSDF SITDGMRDVS GFGIASRPQL DKGLSENNIG FTERVFSAAG AAVLSAVTLN PLDVVKTRLQ AQAAGMSYSH
101: PLSNSIGRMA FFGPNMMFAD LRCSPSCARA GVEGTVSICP PDCFQYKGTF DVFTKIIRQE GLGRLWRGTN AGLALAVPMV GIYLPFYDMF RNRLEELSRE
201: KAPAMTFCVP TVAGSLARSL ACTVCYPIDL ARTRMQAFKE AKAGVKPPGV FKTLVGVFSE VRTANNLESS LHNYRGLWRG LGAQLARDVP FSAICWSTLE
301: PIKKRLLGVA GNDTNLVGVF GATFSAGFIA GSIAAAATCP LDVARTRRQI EKDPGRALMM TTRQTLIEVW RDGGMRGLFM GMGPRVARAG PSVGIVVSFY
401: EVVKYVLHRH ASS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)