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AT4G27800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : thylakoid-associated phosphatase 38
Curator
Summary (TAIR10)
Choroplast protein phosphatase TAP38/PPH1 is required for efficient dephosphorylation of the LHCII anthena and state transition from state 2 to state 1.
Computational
Description (TAIR10)
thylakoid-associated phosphatase 38 (TAP38); FUNCTIONS IN: phosphatase activity, protein serine/threonine phosphatase activity; INVOLVED IN: photosynthetic electron transport chain, photosystem stoichiometry adjustment, dephosphorylation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT4G31860.1); Has 5988 Blast hits to 5975 proteins in 460 species: Archae - 6; Bacteria - 321; Metazoa - 1365; Fungi - 680; Plants - 2480; Viruses - 9; Other Eukaryotes - 1127 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G27800-MONOMERBioCyc:ARA:GQT-2819-MONOMERBioCyc:ARA:GQT-2820-MONOMEREC:3.1.3.16eggNOG:COG0631eggNOG:KOG0698EMBL:AL078579
EMBL:AL161571EMBL:AY080875EMBL:AY114060EMBL:CP002687EMBL:U34803EnsemblPlants:AT4G27800EnsemblPlants:AT4G27800.1
entrez:828893ExpressionAtlas:P49599Gene3D:3.60.40.10GeneID:828893Genevisible:P49599GO:GO:0004721GO:GO:0005634
GO:GO:0005730GO:GO:0005737GO:GO:0009507GO:GO:0009570GO:GO:0009579GO:GO:0009767GO:GO:0016021
GO:GO:0016311GO:GO:0016791GO:GO:0046872GO:GO:0080005HOGENOM:HOG000029436InParanoid:P49599InterPro:IPR000222
InterPro:IPR001932KEGG:ath:AT4G27800OMA:LYKECAAPaxDb:P49599PDB:4YZGPDB:4YZHPDBsum:4YZG
PDBsum:4YZHPfam:P49599Pfam:PF00481Pfscan:PS51746PhylomeDB:P49599PIR:C85323PIR:T09019
PRIDE:P49599PRO:PR:P49599PROSITE:PS01032PROSITE:PS51746ProteinModelPortal:P49599Proteomes:UP000006548RefSeq:NP_194509.1
RefSeq:NP_849459.1RefSeq:NP_849460.1scanprosite:PS01032SMART:SM00332SMR:P49599STRING:3702.AT4G27800.1SUPFAM:SSF81606
TAIR:AT4G27800tair10-symbols:PPH1tair10-symbols:TAP38UniGene:At.23824UniProt:P49599
Coordinates (TAIR10) chr4:-:13852013..13854091
Molecular Weight (calculated) 42721.70 Da
IEP (calculated) 6.02
GRAVY (calculated) -0.14
Length 388 amino acids
Sequence (TAIR10)
(BLAST)
001: MALLRPHLHR FHSNTLRHSA YPSADAGGGL VVYPTYGRHR CSAIAIDAPS SLTGVTPIRW GYTSVQGFRD EMEDDIVIRS DAVDSFSYAA VFDGHAGSSS
101: VKFLREELYK ECVGALQAGS LLNGGDFAAI KEALIKAFES VDRNLLKWLE ANGDEEDESG STATVMIIRN DVSFIAHIGD SCAVLSRSGQ IEELTDYHRP
201: YGSSRAAIQE VKRVKEAGGW IVNGRICGDI AVSRAFGDIR FKTKKNDMLK KGVDEGRWSE KFVSRIEFKG DMVVATPDIF QVPLTSDVEF IILASDGLWD
301: YMKSSDVVSY VRDQLRKHGN VQLACESLAQ VALDRRSQDN ISIIIADLGR TEWKNLPAQR QNVVVELVQA ATTIGLVTVG IWMSSHLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)