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AT4G27780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.579
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : endoplasmic reticulum 12650615
AmiGO : plasma membrane 12650615
SwissProt : plasma membrane 16381842
SwissProt : peroxisome 16381842
SwissProt : endoplasmic reticulum 16381842
TAIR : endoplasmic reticulum 12650615
TAIR : plasma membrane 12650615
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : acyl-CoA binding protein 2
Curator
Summary (TAIR10)
Encodes acyl-CoA-binding protein with ankyrin repeats
Computational
Description (TAIR10)
acyl-CoA binding protein 2 (ACBP2); CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 1 (TAIR:AT5G53470.1); Has 90208 Blast hits to 29988 proteins in 1366 species: Archae - 152; Bacteria - 8068; Metazoa - 46498; Fungi - 7104; Plants - 3511; Viruses - 860; Other Eukaryotes - 24015 (source: NCBI BLink).
Protein Annotations
BioGrid:14178DIP:DIP-32848NeggNOG:COG4281eggNOG:KOG0817EMBL:AF178947EMBL:AF192307EMBL:AF320561
EMBL:AL078579EMBL:AL161571EMBL:AY088510EMBL:AY090256EMBL:AY122892EMBL:CP002687EnsemblPlants:AT4G27780
EnsemblPlants:AT4G27780.1entrez:828891Gene3D:1.20.80.10Gene3D:1.25.40.20GeneID:828891Genevisible:Q9STP8GO:GO:0000062
GO:GO:0001666GO:GO:0005778GO:GO:0005783GO:GO:0005789GO:GO:0005886GO:GO:0006869GO:GO:0008289
GO:GO:0009514GO:GO:0010288GO:GO:0016021GO:GO:0032791Gramene:AT4G27780.1hmmpanther:PTHR24119hmmpanther:PTHR24119:SF0
HOGENOM:HOG000241133InParanoid:Q9STP8IntAct:Q9STP8InterPro:IPR000582InterPro:IPR002110InterPro:IPR014352InterPro:IPR020683
iPTMnet:Q9STP8KEGG:ath:AT4G27780OMA:CESDWPWPaxDb:Q9STP8Pfam:PF00887Pfam:PF13857Pfam:Q9STP8
Pfscan:PS50088Pfscan:PS50297Pfscan:PS51228PhylomeDB:Q9STP8PIR:T09017PRIDE:Q9STP8PRINTS:PR00689
PRINTS:PR01415PRO:PR:Q9STP8PROSITE:PS50088PROSITE:PS50297PROSITE:PS51228ProteinModelPortal:Q9STP8Proteomes:UP000006548
RefSeq:NP_194507.1SMART:SM00248SMR:Q9STP8STRING:3702.AT4G27780.1SUPFAM:SSF47027SUPFAM:SSF48403TAIR:AT4G27780
tair10-symbols:ACBP2TMHMM:TMhelixUniGene:At.25382UniProt:Q9STP8
Coordinates (TAIR10) chr4:+:13847774..13849629
Molecular Weight (calculated) 38481.50 Da
IEP (calculated) 4.16
GRAVY (calculated) -0.45
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDWAQLAQS VILGLIFSYL LAKLISIVVT FKEDNLSLTR HPEESQLEIK PEGVDSRRLD SSCGGFGGEA DSLVAEQGSS RSDSVAGDDS EEDDDWEGVE
101: STELDEAFSA ATLFVTTAAA DRLSQKVPSD VQQQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIEIVTQLYP TWLDGGVKAG
201: SRGGDDAASN SRGTMGPVFS SLVYDEESEN ELKIDAIHGF AREGEVENLL KSIESGIPVN ARDSEGRTPL HWAIDRGHLN IAKVLVDKNA DVNAKDNEGQ
301: TPLHYAVVCD REAIAEFLVK QNANTAAKDE DGNSPLDLCE SDWPWIRDSA KQAD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)