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AT4G27750.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
nucleus 0.770
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : binding
Curator
Summary (TAIR10)
A genetic locus involved in sugar sensing and coordinating carbohydrate synthesis and utilization by the whole plant. Lines carrying mutations in this gene shows restricted carbohydrate allocation to plant growth and seed set, elevated chlorophyll levels, and reduced sugar induction of starch biosynthesis.
Computational
Description (TAIR10)
IMPAIRED SUCROSE INDUCTION 1 (ISI1); FUNCTIONS IN: binding; INVOLVED IN: sucrose mediated signaling, regulation of carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cell division control 14, SIN component (InterPro:IPR012535), Armadillo-type fold (InterPro:IPR016024); Has 74 Blast hits to 74 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 31; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:828889eggNOG:ENOG410IGS5eggNOG:ENOG410Y757EMBL:AJ697740EMBL:BT003934EMBL:BT005053EMBL:CP002687
EnsemblPlants:AT4G27750EnsemblPlants:AT4G27750.1entrez:828889Gene3D:1.25.10.10GeneID:828889GO:GO:0006109Gramene:AT4G27750.1
hmmpanther:PTHR34065hmmpanther:PTHR34065:SF1HOGENOM:HOG000070850InterPro:IPR011989InterPro:IPR012535InterPro:IPR016024KEGG:ath:AT4G27750
OMA:LIRDKQVPfam:PF08045PhylomeDB:Q84J43Proteomes:UP000006548RefSeq:NP_194505.2STRING:3702.AT4G27750.1SUPFAM:SSF48371
TAIR:AT4G27750tair10-symbols:ISI1UniGene:At.27940UniProt:Q84J43
Coordinates (TAIR10) chr4:+:13841708..13843501
Molecular Weight (calculated) 33488.20 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.03
Length 305 amino acids
Sequence (TAIR10)
(BLAST)
001: MYLKRPIWSD GASATPENPS ESETGEESDA ASMVVEELVT SLNTQRLYRE LTLSLRTGLR DACAEFSFLR IRGLRSLLKT LRTVADSDSI IRLFSHTQTI
101: SDLQLVPVLF QHSLKEAEDD KVTSLDHIFS VEPMKITSPS TDAEVAVALR VLEGCCLLHP QSTVLAHKHG AVRVMMNVLS TRGVLEQGAC LDALISVLLD
201: SSANQVDFGA CNGIEEVAML MRDKQADENL RLRCGEFLLL LVGHVNGKDR SPIASVNEDI RRLLGEKSAS LIWAASQFGS TGDPEQRITA LHIQAGRVLE
301: SLDLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)