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AT4G27680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.973
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G53540.1); Has 30260 Blast hits to 27737 proteins in 3108 species: Archae - 1486; Bacteria - 10702; Metazoa - 4856; Fungi - 3534; Plants - 2690; Viruses - 34; Other Eukaryotes - 6958 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G27680-MONOMEReggNOG:COG0464eggNOG:KOG0737EMBL:AK226334
EMBL:AL035602EMBL:AL161571EMBL:AY085265EMBL:AY093063
EMBL:BT000126EMBL:CP002687EnsemblPlants:AT4G27680EnsemblPlants:AT4G27680.1
entrez:828882Gene3D:3.40.50.300GeneID:828882GO:GO:0000502
GO:GO:0005524GO:GO:0016021GO:GO:0016787Gramene:AT4G27680.1
hmmpanther:PTHR23074hmmpanther:PTHR23074:SF20HOGENOM:HOG000225141InterPro:IPR003593
InterPro:IPR003959InterPro:IPR003960InterPro:IPR027417KEGG:ath:AT4G27680
OMA:TDPHARVPfam:PF00004PhylomeDB:Q9T090PIR:T05873
PROSITE:PS00674Proteomes:UP000006548RefSeq:NP_194498.1scanprosite:PS00674
SMART:SM00382SMR:Q9T090STRING:3702.AT4G27680.1SUPFAM:SSF52540
TAIR:AT4G27680TMHMM:TMhelixUniGene:At.32076UniProt:Q9T090
Coordinates (TAIR10) chr4:+:13821263..13823083
Molecular Weight (calculated) 44204.20 Da
IEP (calculated) 6.03
GRAVY (calculated) -0.23
Length 398 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGSSETKIL QELILYAASA AFSCLVLFAG LRHLDPNREA SKKALEHKKE ISKRLGRPLV QTNPYEDVIA CDVINPDHID VEFGSIGGLE TIKQALYELV
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVSAV FSLAYKLQPA IIFIDEVESF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP HARVMVLAAT NRPSELDEAI LRRLPQAFEI GIPDRRERAE ILKVTLKGER VEPDIDFDHI ARLCEGYTGS DIFELCKKAA
301: YFPIREILDA ERKGKPCLDP RPLSQLDLEK VLATSKKTQV AAGEYSLSSQ SSAWRGSREP DEVQAAISGI SKLLVSQIIN LQSESQDSWQ RDPEEDSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)