suba logo
AT4G27670.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : heat shock protein 21
Curator
Summary (TAIR10)
chloroplast located small heat shock protein.
Computational
Description (TAIR10)
heat shock protein 21 (HSP21); CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT5G51440.1); Has 6158 Blast hits to 6158 proteins in 1414 species: Archae - 225; Bacteria - 3528; Metazoa - 23; Fungi - 170; Plants - 1466; Viruses - 0; Other Eukaryotes - 746 (source: NCBI BLink).
Protein Annotations
BioGrid:14168eggNOG:COG0071eggNOG:KOG0710EMBL:AK119078
EMBL:AL035602EMBL:AL161571EMBL:CP002687EMBL:DQ446875
EMBL:DQ653229EMBL:M94455EMBL:X54102EnsemblPlants:AT4G27670
EnsemblPlants:AT4G27670.1entrez:828881Gene3D:2.60.40.790GeneID:828881
Genevisible:P31170GO:GO:0009408GO:GO:0009507GO:GO:0009644
GO:GO:0042542Gramene:AT4G27670.1hmmpanther:PTHR11527hmmpanther:PTHR11527:SF167
HOGENOM:HOG000238886InParanoid:P31170InterPro:IPR002068InterPro:IPR008978
InterPro:IPR031107KEGG:ath:AT4G27670KO:K13993OMA:IKMRFDM
PANTHER:PTHR11527PaxDb:P31170Pfam:P31170Pfam:PF00011
Pfscan:PS01031PhylomeDB:P31170PIR:S35240PRIDE:P31170
PRO:PR:P31170PROSITE:PS01031ProteinModelPortal:P31170Proteomes:UP000006548
RefSeq:NP_194497.1SMR:P31170STRING:3702.AT4G27670.1SUPFAM:SSF49764
TAIR:AT4G27670tair10-symbols:HSP21UniGene:At.5368UniProt:P31170
Coordinates (TAIR10) chr4:-:13819048..13819895
Molecular Weight (calculated) 25345.30 Da
IEP (calculated) 8.72
GRAVY (calculated) -0.64
Length 227 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTLSFAAS ALCSPLAPSP SVSSKSATPF SVSFPRKIPS RIRAQDQREN SIDVVQQGQQ KGNQGSSVEK RPQQRLTMDV SPFGLLDPLS PMRTMRQMLD
101: TMDRMFEDTM PVSGRNRGGS GVSEIRAPWD IKEEEHEIKM RFDMPGLSKE DVKISVEDNV LVIKGEQKKE DSDDSWSGRS VSSYGTRLQL PDNCEKDKIK
201: AELKNGVLFI TIPKTKVERK VIDVQIQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)