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AT4G27590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.922
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Heavy metal transport/detoxification superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT3G56891.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2608eggNOG:KOG1603EMBL:CP002687EnsemblPlants:AT4G27590EnsemblPlants:AT4G27590.1entrez:828869ExpressionAtlas:F4JJP0
GeneID:828869GO:GO:0030001GO:GO:0046872Gramene:AT4G27590.1hmmpanther:PTHR22814hmmpanther:PTHR22814:SF49InterPro:IPR006121
PaxDb:F4JJP0Pfam:PF00403PRIDE:F4JJP0ProteinModelPortal:F4JJP0Proteomes:UP000006548RefSeq:NP_567779.1STRING:3702.AT4G27590.2
SUPFAM:SSF55008TAIR:AT4G27590UniGene:At.32089UniProt:F4JJP0
Coordinates (TAIR10) chr4:+:13771224..13771790
Molecular Weight (calculated) 18133.90 Da
IEP (calculated) 9.61
GRAVY (calculated) -0.38
Length 156 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDLQIVPVY NKVEAQYVEM MVPLYSYGCE KKVKRALSHL KGIYSVKVDY YNQKVTVWGI CNKLDVLAMV KKKRKEARFW NVEEEENNNP ESVDDCIVVK
101: EDTIIKTSFD TDKSSAFYTY STTPPRFSIR PPMSLIRTSS FTWKAVKKVF TRSLSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)