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AT4G27490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : 3'-5'-exoribonuclease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
3'-5'-exoribonuclease family protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: 3'-5'-exoribonuclease family protein (TAIR:AT3G61620.2); Has 6020 Blast hits to 6020 proteins in 1904 species: Archae - 333; Bacteria - 3622; Metazoa - 423; Fungi - 273; Plants - 197; Viruses - 0; Other Eukaryotes - 1172 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0689eggNOG:ENOG410IK3WEMBL:AK118812EMBL:AL078467EMBL:AL161571EMBL:BT029998EMBL:BT030054
EMBL:CP002687EnsemblPlants:AT4G27490EnsemblPlants:AT4G27490.1entrez:828858Gene3D:3.30.230.70GeneID:828858GO:GO:0000176
GO:GO:0000177GO:GO:0003723GO:GO:0005634GO:GO:0005730GO:GO:0005737GO:GO:0008408GO:GO:0009845
GO:GO:0016075GO:GO:0031125GO:GO:0034427GO:GO:0034475GO:GO:0071028GO:GO:0071051GO:GO:0090305
GO:GO:0090351Gramene:AT4G27490.1hmmpanther:PTHR11953hmmpanther:PTHR11953:SF2HOGENOM:HOG000229515IntAct:A2RVK7InterPro:IPR001247
InterPro:IPR015847InterPro:IPR020568InterPro:IPR027408iPTMnet:A2RVK7KEGG:ath:AT4G27490KO:K12587OMA:GRLLCDF
PaxDb:A2RVK7Pfam:PF01138Pfam:PF03725PhylomeDB:A2RVK7PIR:T08941PRO:PR:A2RVK7Proteomes:UP000006548
Reactome:R-ATH-429958Reactome:R-ATH-450604RefSeq:NP_194479.2SMR:A2RVK7STRING:3702.AT4G27490.1SUPFAM:SSF54211SUPFAM:SSF55666
TAIR:AT4G27490UniGene:At.46035UniProt:A2RVK7
Coordinates (TAIR10) chr4:+:13739961..13741647
Molecular Weight (calculated) 27449.80 Da
IEP (calculated) 4.61
GRAVY (calculated) -0.03
Length 256 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAKPGAATP TYSPKIVGRS RLPIFKDSDL DWSRPDGRGF HQCRPALLQT GAVSSASGSA YAEFGNTKVI VSVFGPRESK KAMVYSDVGR LNCNVSYTNF
101: ASPTLGQGTD HKEYSSMLHK ALEGVIMMET FPKTTVDVFA LVLESGGSDL SVLISCASLA LADAGIMMYD LITAVSVSCI GKSLMIDPVT EEEGCEDGSF
201: MMTCMPSRYE ITQLTITGEW TTPNINEAMQ LCLDASSKLG EIMRDCLKQS ASASDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)