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AT4G27450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24012629 (2013): nucleus
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Aluminium induced protein with YGL and LRDR motifs
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Aluminium induced protein with YGL and LRDR motifs; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Aluminium induced protein with YGL and LRDR motifs (TAIR:AT3G15450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:828854eggNOG:ENOG410IF0ZeggNOG:ENOG410YD56EMBL:AF375452
EMBL:AY045885EMBL:AY087420EMBL:AY091306EMBL:CP002687
EnsemblPlants:AT4G27450EnsemblPlants:AT4G27450.1entrez:828854Gene3D:3.60.20.10
GeneID:828854GO:GO:0005634GO:GO:0005829GO:GO:0005886
GO:GO:0009506Gramene:AT4G27450.1hmmpanther:PTHR11772hmmpanther:PTHR11772:SF14
HOGENOM:HOG000240407InterPro:IPR024286InterPro:IPR029055KEGG:ath:AT4G27450
MEROPS:C44.A04OMA:VIYDSKAPfam:PF12481Proteomes:UP000006548
RefSeq:NP_567775.1SMART:SM01172STRING:3702.AT4G27450.1SUPFAM:SSF56235
TAIR:AT4G27450UniGene:At.25186UniGene:At.68765UniProt:Q93V62
Coordinates (TAIR10) chr4:-:13727665..13728683
Molecular Weight (calculated) 27623.90 Da
IEP (calculated) 5.65
GRAVY (calculated) -0.10
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MLAIFHEAFA HPPEELNSPA SEKCSKQPKL PEETLNDFLL RYPLNTFSMS FGQAAVLAYV RPSASFSIHQ RLFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)