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AT4G27430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22182420 (2012): endoplasmic reticulum
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : COP1-interacting protein 7
Curator
Summary (TAIR10)
Positive regulator of light-regulated genes. Novel nuclear protein which requires light for its high level expression.
Computational
Description (TAIR10)
COP1-interacting protein 7 (CIP7); FUNCTIONS IN: transcription activator activity; INVOLVED IN: chlorophyll biosynthetic process, response to light stimulus, anthocyanin biosynthetic process; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR class), putative (TAIR:AT1G61100.1); Has 13314 Blast hits to 9115 proteins in 689 species: Archae - 12; Bacteria - 824; Metazoa - 5362; Fungi - 1404; Plants - 789; Viruses - 71; Other Eukaryotes - 4852 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJVXeggNOG:ENOG4111427EMBL:AB012912EMBL:AL078467
EMBL:AL161571EMBL:CP002687EnsemblPlants:AT4G27430EnsemblPlants:AT4G27430.1
EnsemblPlants:AT4G27430.2entrez:828851GeneID:828851GO:GO:0005634
GO:GO:0005886GO:GO:0009416GO:GO:0009718GO:GO:0015995
GO:GO:0045893Gramene:AT4G27430.1Gramene:AT4G27430.2hmmpanther:PTHR31008
hmmpanther:PTHR31008:SF4HOGENOM:HOG000093042KEGG:ath:AT4G27430ncoils:Coil
OMA:HEPDDLYPhylomeDB:O80386PIR:T08935Proteomes:UP000006548
RefSeq:NP_001119068.1RefSeq:NP_194473.1STRING:3702.AT4G27430.1TAIR:AT4G27430
tair10-symbols:CIP7UniGene:At.23441UniProt:O80386
Coordinates (TAIR10) chr4:+:13718817..13722736
Molecular Weight (calculated) 118431.00 Da
IEP (calculated) 6.15
GRAVY (calculated) -0.94
Length 1058 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDPRTRLDYA LFQLTPTRTR CDLVIFSGGE NEKLASGIFQ PFVTHLKSVS DQISKGGYSV TLRPSSVGVP WFTKVTLQRF VRFVTTPEVL ERSVTLEKEI
0101: EQIEDSIQAN AAAIAGEAEG NELGGTWTSQ KSTALSKTKG ETDGDTVEEN SKVGLQRVLE NRKAALCKEQ AMAYARALVV GFELDYMDDL FSFADAFGAS
0201: RLREACVNFV DLCKRKNEDR MWVDQITAMQ AFPRPELTFM GDSGIVLAGE ENDLLNATNV KHGNSMDASS QGSFETGQEG RAQMAMPWPN QFPQYMQNFQ
0301: GHGYPPPYMF PGMQGQSPYF HGNMQWPVNM GDVESNEKSS KKKKKKKKNK KKSKQDESAE PSDNSSTETE SEDGNEGKKQ SRKVVIRNIN YITSKRNGAK
0401: ESDSDESGEE EGFVDGDSIK QQVEEAIGSV ERRHKSTSHR QRKHKSHNGD DDSSNKETKG NDNWDAFQNL LLKDNDSEPE ELLRISSTAL NMASEVVRKR
0501: EPPSDDSFLV AIGNEDWGRE TSIEKFNAGE NVRIIRKGNN YDEEMLNPGR SDESRSYSQA EMSVHDGKLR TRNEAEEDWF IRNQAGPETD PSLVKTFVGD
0601: HFHLNKSSER DVLTDDSFMI HSRVENQVED SRLRTEIMDL DVYGTTQQEN SAPENTPHEP DDLYMVLGRE QDVKPTLLPW TPEIDFETNT LAQRTSRIDL
0701: ITATKASAGE QTLDGKEKKS RGISKGKDAK SRASSRPDPA SKAKRPAWGS RAAVSKSKSE MEEERKKRME ELLIQRQKRI AEKSSGGSVS SSLASKKTPT
0801: VTKSVKSSIK NEKTPEAAQS KAKPVLRSST IERLAVARTA PKEPQQKPVI KRTSKPSGYK TEKAQEKKSS KIGQSDAKSV ELSRDPSLEI KETVVEDSHS
0901: YLSEKQVDAL PAVASVDDFK DIKELHSLPS EETARVKNRP NEIIAEKVQD QTKIDDQETV KNTSVSEDKQ ITTKHYSEDV GEVQASQEKP VSPKKSVTFS
1001: ETNMEEKYYF SPAVSEIDIS TPPATEADHS RKKWNSEETS PKATAKVFRK LLMFGRKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)