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AT4G27410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Curator
Summary (TAIR10)
Encodes a NAC transcription factor induced in response to dessication. It is localized to the nucleus and acts as a transcriptional activator in ABA-mediated dehydration response.
Computational
Description (TAIR10)
RESPONSIVE TO DESICCATION 26 (RD26); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 19 (TAIR:AT1G52890.1); Has 297 Blast hits to 297 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKRReggNOG:ENOG4111FG3EMBL:CP002687EnsemblPlants:AT4G27410EnsemblPlants:AT4G27410.1entrez:828849ExpressionAtlas:F4JIV0
GeneID:828849GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT4G27410.1hmmpanther:PTHR31719
hmmpanther:PTHR31719:SF39InterPro:IPR003441PaxDb:F4JIV0Pfscan:PS51005PRIDE:F4JIV0PROSITE:PS51005ProteinModelPortal:F4JIV0
Proteomes:UP000006548RefSeq:NP_849457.1STRING:3702.AT4G27410.3SUPFAM:SSF101941TAIR:AT4G27410tair10-symbols:RD26UniGene:At.20412
UniProt:F4JIV0
Coordinates (TAIR10) chr4:-:13707928..13708505
Molecular Weight (calculated) 17999.50 Da
IEP (calculated) 5.99
GRAVY (calculated) -0.69
Length 164 amino acids
Sequence (TAIR10)
(BLAST)
001: MHEYRLIEHS RSHGSSKLDD WVLCRIYKKT SGSQRQAVTP VQACREEHST NGSSSSSSSQ LDDVLDSFPE IKDQSFNLPR MNSLRTILNG NFDWASLAGL
101: NPIPELAPTN GLPSYGGYDA FRAAEGEAES GHVNRQQNSS GLTQSFGYSS SGFGVSGQTF EFRQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)